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swarm
by Yeachan-Heo
N coordinated agents on shared task list (compatibility facade over team)
ena-database
by K-Dense-AI
Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.
drugbank-database
by K-Dense-AI
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. This skill should be used when working with pharmaceutical data, drug discovery research, pharmacology studies, drug-drug interaction analysis, target identification, chemical similarity searches, ADMET predictions, or any task requiring detailed drug and drug target information from DrugBank.
cellxgene-census
by K-Dense-AI
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.
geniml
by K-Dense-AI
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
datacommons-client
by K-Dense-AI
Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available through Data Commons. Applicable for querying population statistics, GDP figures, unemployment rates, disease prevalence, geographic entity resolution, and exploring relationships between statistical entities.
ralph
by Yeachan-Heo
Self-referential loop until task completion with architect verification
ensembl-database
by K-Dense-AI
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
learner
by Yeachan-Heo
Extract a learned skill from the current conversation
brenda-database
by K-Dense-AI
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
histolab
by K-Dense-AI
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatial proteomics, multiplexed imaging, or deep learning pipelines use pathml.
worker
by Yeachan-Heo
Team worker protocol (ACK, mailbox, task lifecycle) for tmux-based OMX teams
deep-interview
by Yeachan-Heo
Socratic deep interview with mathematical ambiguity gating before execution
obsidian-cli
by kepano
Interact with Obsidian vaults using the Obsidian CLI to read, create, search, and manage notes, tasks, properties, and more. Also supports plugin and theme development with commands to reload plugins, run JavaScript, capture errors, take screenshots, and inspect the DOM. Use when the user asks to interact with their Obsidian vault, manage notes, search vault content, perform vault operations from the command line, or develop and debug Obsidian plugins and themes.
obsidian-bases
by kepano
Create and edit Obsidian Bases (.base files) with views, filters, formulas, and summaries. Use when working with .base files, creating database-like views of notes, or when the user mentions Bases, table views, card views, filters, or formulas in Obsidian.
defuddle
by kepano
Extract clean markdown content from web pages using Defuddle CLI, removing clutter and navigation to save tokens. Use instead of WebFetch when the user provides a URL to read or analyze, for online documentation, articles, blog posts, or any standard web page. Do NOT use for URLs ending in .md — those are already markdown, use WebFetch directly.
obsidian-markdown
by kepano
Create and edit Obsidian Flavored Markdown with wikilinks, embeds, callouts, properties, and other Obsidian-specific syntax. Use when working with .md files in Obsidian, or when the user mentions wikilinks, callouts, frontmatter, tags, embeds, or Obsidian notes.
analyze
by Yeachan-Heo
Deep analysis and investigation
pipeline
by Yeachan-Heo
Chain agents together in sequential or branching workflows with data passing
configure-slack
by Yeachan-Heo
Configure Slack incoming webhook notifications via natural language
note
by Yeachan-Heo
Save notes to notepad.md for compaction resilience
ccg
by Yeachan-Heo
Claude-Codex-Gemini tri-model orchestration - fans out backend tasks to Codex and frontend/UI tasks to Gemini in parallel, then Claude synthesizes results
omc-help
by Yeachan-Heo
Guide on using oh-my-claudecode plugin
review
by Yeachan-Heo
Alias for /plan --review