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ascii-mini-charts

by partme-ai

Generate ASCII mini charts (sparkline/bar/simple line) for plain-text trend inspection, with minimal + annotated variants and normalization notes.

xlsx-122B

by Qwen-Applications

Use when handling spreadsheet tasks in .xlsx files with the released 122B created-from-scratch skill

xlsx

by Qwen-Applications

"Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualization. When Qwen-Agent needs to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv, etc) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing data, (3) Modify existing spreadsheets while preserving formulas, (4) Data analysis and visualization in spreadsheets, or (5) Recalculating formulas"

tooluniverse-gwas-snp-interpretation

by mims-harvard

Interpret genetic variants (SNPs) from GWAS studies by aggregating evidence from multiple databases (GWAS Catalog, Open Targets Genetics, ClinVar). Retrieves variant annotations, GWAS trait associations, fine-mapping evidence, locus-to-gene predictions, and clinical significance. Use when asked to interpret a SNP by rsID, find disease associations for a variant, assess clinical significance, or answer questions like "What diseases is rs429358 associated with?" or "Interpret rs7903146".

ljg-skills

by lijigang

bio-splicing-qc

by GPTomics

Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. Use when evaluating data suitability for splicing analysis or troubleshooting low event detection.

bio-chipseq-peak-annotation

by GPTomics

Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. Assign peaks to promoters, exons, introns, and intergenic regions. Find nearest genes and calculate distance to TSS. Generate annotation plots and statistics. Use when annotating ChIP-seq peaks to genomic features.

bio-differential-splicing

by GPTomics

Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). Reports events with FDR-corrected significance and delta PSI effect sizes. Use when comparing splicing patterns between treatment groups, tissues, or disease states.

narrative-text-visualization

by antvis

Generate structured narrative text visualizations from data using T8 Syntax. Use when users want to create data interpretation reports, summaries, or structured articles with semantic entity annotations. T8 is designed for unstructured data visualization where T stands for Text and 8 represents a byte of 8 bits, symbolizing deep insights beneath the text.

code-review-expert

by sanyuan0704

"Expert code review of current git changes with a senior engineer lens. Detects SOLID violations, security risks, and proposes actionable improvements."

docstring

by pipecat-ai

Document a Python module and its classes using Google style

claude-in-mobile

by AlexGladkov

"This skill should be used when the user asks to interact with device screens (screenshot, annotate, tap, swipe, type text), manage apps (install, launch, stop, uninstall), transfer files (push, pull), query device info (logs, system info, clipboard, screen size), run shell commands, manage desktop windows, or automate Android, iOS, Aurora OS, or Desktop apps."

doc-updates

by majiayu000

update-docs

by meta-pytorch

Update documentation across the repo after API changes. Finds stale references in docs, examples, docstrings, and fixes them.

bio-clinical-databases-dbsnp-queries

by GPTomics

Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.

bio-alignment-msa-parsing

by GPTomics

Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.

xhs-apis

by cv-cat

Use this skill when you need to call the vendored Xiaohongshu/XHS APIs from Spider_XHS for PC web data or creator-platform publishing data. This skill only wraps the APIs in xhs_pc_apis.py and xhs_creator_apis.py, including note, user, search, comment, topic, location, media upload, note publishing, and creator published-note queries.

gene-database

by K-Dense-AI

Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.

bio-clinical-databases-myvariant-queries

by GPTomics

Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. Use when annotating variants with clinical and population data from multiple sources simultaneously.

bio-splicing-quantification

by GPTomics

Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. Calculates inclusion levels for skipped exons, alternative splice sites, mutually exclusive exons, and retained introns. Use when measuring splice site usage or isoform ratios from RNA-seq data.

agentation-self-driving

by benjitaylor

Autonomous design critique mode using the Agentation annotation toolbar. Use when the user asks to "critique this page," "add design annotations," "review the UI," "self-driving mode," "auto-annotate," or wants an AI agent to autonomously add design feedback annotations to a web page via the browser. Requires the Agentation toolbar to be installed on the target page and agent-browser skill to be available.

sap-abap-cds

by secondsky

Comprehensive SAP ABAP CDS (Core Data Services) reference for data modeling, view development, and semantic enrichment. Use when creating CDS views or view entities in ABAP, defining data models with annotations (@AbapCatalog, @AccessControl, @EndUserText, @Semantics, @UI, @Consumption, @ObjectModel), working with associations and cardinality, implementing input parameters, using built-in functions (string, numeric, date/time), writing CASE expressions and conditional logic, implementing access control with DCL (Data Control Language), handling CURR/QUAN data types with reference fields, troubleshooting CDS errors (SD_CDS_ENTITY105), querying CDS views from ABAP, or displaying data with SALV IDA. Covers ABAP 7.4+ through ABAP Cloud with production-tested patterns. Keywords: ABAP CDS, Core Data Services, CDS view, CDS view entity, define view, define view entity, DDL, Data Definition Language, DCL, Data Control Language, annotations, @AbapCatalog, @AccessControl, @EndUserText, @Semantics, @UI, @Consumption, @ObjectModel, @Metadata, associations, cardinality, TO ONE, TO MANY, path expressions, input parameters, WITH PARAMETERS, built-in functions, CASE expression, CAST, session variables, $session, aggregate functions, GROUP BY, HAVING, joins, INNER JOIN, LEFT OUTER JOIN, access control, DEFINE ROLE, pfcg_auth, authorization, SALV IDA, cl_salv_gui_table_ida, Eclipse ADT, ABAP Development Tools, CDS annotations, Fiori Elements, OData, RAP, ABAP RESTful Application Programming Model, currencyCode, unitOfMeasure, SD_CDS_ENTITY105

docs-search

by davila7

Search auto-generated codebase documentation for function signatures, API docs, class definitions, and code comments. Use when the user asks to "search docs", "find documentation", "look up a function", "check the API", or before implementing changes to verify correct signatures and patterns.

clinvar-database

by K-Dense-AI

Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.