文件操作
文件系统与批量文件任务
copywriter
shipshitdev
Brand voice guardian and conversion-focused copywriter, specializing in direct, no-fluff copy that adapts to project's brand voice
context-fundamentals
shipshitdev
Understand the components, mechanics, and constraints of context in agent systems. Use when designing agent architectures, debugging context-related failures, or optimizing context usage.
learn
agentskill-sh
Discover, install, and manage AI agent skills from agentskill.sh. Search for capabilities, install mid-session, scan for security issues, and provide feedback. Use when asked to find skills, install extensions, or check skill safety.
code-context
rajnandan1
Persistent code architecture documentation via a .codecontext/ folder.
file-review-install
desplega-ai
Install the file-review tool. Use when user needs to install file-review on a new machine or asks how to set it up.
process-review
desplega-ai
Process review comments in a file after user finishes reviewing in file-review GUI. Extracts HTML comment markers, guides Claude through addressing each comment interactively, and removes resolved markers.
component-identification-sizing
tech-leads-club
Identifies architectural components in codebases and calculates size metrics for decomposition planning. Use when analyzing codebase structure, planning monolithic decomposition, identifying oversized components, calculating component statistics, or when the user asks about component analysis, codebase sizing, or architectural decomposition.
debugging-streamlit
streamlit
Debug Streamlit frontend and backend changes using make debug with hot-reload. Use when testing code changes, investigating bugs, checking UI behavior, or needing screenshots of the running app.
updating-internal-docs
streamlit
Review internal documentation (*.md files) against the current codebase state and propose updates for outdated or incorrect information.
swarm-planner
am-will
[EXPLICIT INVOCATION ONLY] Creates dependency-aware implementation plans optimized for parallel multi-agent execution.
parallel-task
am-will
Only to be triggered by explicit /parallel-task commands.
parallel-task-spark
am-will
Only to be triggered by explicit /parallel-task-spark commands.
jujutsu
cryfs
Guide to Jujutsu (jj) version control system. Use when working with commits, branches, pull requests, PRs, version control, rebasing, pushing, or when the user mentions jj, git, or version control operations.
super-swarm-spark
am-will
Only to be triggered by explicit super-swarm-spark commands.
retype
knoopx
Refactors TypeScript codebases with AST-aware rename, extract, and reference finding. Use for moving functions between files, renaming across codebase, or finding all usages of a symbol.
flowio-flow-cytometry
jaechang-hits
"Parse and create FCS (Flow Cytometry Standard) files v2.0-3.1. Read event data as NumPy arrays, extract channel metadata, handle multi-dataset files, export to CSV/FCS. For advanced gating and compensation use FlowKit."
encode-database
jaechang-hits
"Query the ENCODE Portal REST API for regulatory genomics data: TF ChIP-seq experiments, ATAC-seq/DNase-seq accessibility peaks, histone mark tracks, and RNA-seq datasets across 1000+ cell types and tissues. Search experiments by assay, biosample, or target protein; download BED/bigWig files; retrieve candidate cis-regulatory elements (cCREs) from ENCODE SCREEN by genomic region or gene. Use for finding regulatory tracks to annotate variants, identifying open chromatin in a cell type of interest, and downloading peak files for ChIP-seq or ATAC-seq analysis. For regulatory variant scoring use regulomedb-database; for GWAS associations use gwas-database."
geniml
jaechang-hits
"Geniml is a Python library for genomic interval machine learning. Train and apply region2vec embeddings to convert BED file regions into numeric vectors, load and index genomic interval datasets for ML pipelines, search embedding spaces with BEDSpace, and evaluate embedding quality. Use for chromatin accessibility clustering, regulatory element classification, cross-sample region comparison, and building ML models on genomic intervals."
gtars
jaechang-hits
"GTARS is a Rust-backed Python library for fast genomic token arithmetic and BED file processing. Perform high-performance BED file I/O, genomic interval set operations (intersect, merge, complement, subtract), tokenization of genomic regions against a universe, and universe construction. Use for preprocessing large BED file collections, building token vocabularies for ML pipelines, and computing interval statistics at scale."
gget-genomic-databases
jaechang-hits
"Unified CLI/Python interface to 20+ genomic databases. Use for quick gene lookups (Ensembl search/info/seq), BLAST/BLAT sequence alignment, AlphaFold structure prediction, enrichment analysis (Enrichr), disease/drug associations (OpenTargets), single-cell data (CELLxGENE), cancer genomics (cBioPortal/COSMIC), and expression correlation (ARCHS4). Covers genomics, proteomics, and disease domains. For batch processing or advanced BLAST use biopython; for multi-database Python SDK workflows use bioservices."
cnvkit-copy-number
jaechang-hits
"Detect somatic copy number variants (CNVs) from WES, WGS, or targeted sequencing BAM files with CNVkit v0.9.x. Pipeline: calculate bin-level coverage in target/antitarget regions, normalize against a reference, segment copy ratios with CBS or HMM, call amplifications and deletions, generate scatter/diagram plots, estimate tumor purity and ploidy, and export to VCF/SEG. Both CLI and Python API (cnvlib) shown. Use GATK CNV instead for deep WGS with population-scale controls; use CNVkit for targeted or exome sequencing where antitarget bins are critical."
docx
appautomaton
"Comprehensive document creation, editing, and analysis with support for tracked changes, comments, formatting preservation, and text extraction. When Claude needs to work with professional documents (.docx files) for: (1) Creating new documents, (2) Modifying or editing content, (3) Working with tracked changes, (4) Adding comments, or any other document tasks"
xlsx
appautomaton
"Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualization. When Claude needs to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv, etc) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing data, (3) Modify existing spreadsheets while preserving formulas, (4) Data analysis and visualization in spreadsheets, or (5) Recalculating formulas"
skill-creator
openclaw
Create or update AgentSkills. Use when designing, structuring, or packaging skills with scripts, references, and assets.