mseok
@mseok
Public Skills
audit-project-structure
by mseok
"Audit a research project's structure against the current init-project template. Reports missing directories, files, symlinks, and seed content. Report-only — except for rules sync (Phase 3.8) and permissions sync (Phase 3.11), which actively update the project."
code-review
by mseok
"Quality review for R and Python research scripts. 11-category scorecard covering reproducibility, structure, domain correctness, cross-language verification, and more. Report-only — never edits source files."
pre-submission-report
by mseok
"Run all quality checks and produce a single dated report before submission or sharing."
interview-me
by mseok
"Interactive interview to formalise a research idea into a structured specification with hypotheses and empirical strategy. Conversational — asks questions one at a time."
init-project
by mseok
"Bootstrap a new research project. Interview for details, scaffold directory structure, create Overleaf symlink, initialise git, and create project context files."
beamer-deck
by mseok
"Generate academic Beamer presentations with multi-agent review. Builds original themes, applies rhetoric principles, iterates until zero warnings."
session-close
by mseok
"End-of-session checklist. Checks for uncommitted changes, offers to update focus, project docs, context, and session log. Replaces the old stop reminder flow."
project-safety
by mseok
"Set up safety rules and folder structures for research projects. Prevent accidental data loss when Codex reorganizes files."
todoist-roadmap-manager
by mseok
Manage Todoist roadmap execution for research programs. Use when tasks must be structured into multiple projects, labels standardized, milestone names normalized, due dates synchronized idempotently, or accidentally completed tasks restored.
single-paper-review
by mseok
Create a detailed single-paper summary note in Markdown (Obsidian-friendly). Use when asked for "paper review" meaning "논문 정리/요약", single-paper deep summary, or when the user wants method and results written with metric definitions (math + interpretation) and reusable figures/tables embedded from Attachments/.
update-focus
by mseok
"Update current-focus.md with a structured session summary. Preserves the document's rich structure: weekly focus, session history rotation, open loops, mental state. Use at end of work sessions or when a session-end reminder appears."
learn
by mseok
"Extract reusable knowledge from the current session into a persistent skill.\nUse when you discover something non-obvious, create a workaround, or develop\na multi-step workflow that future sessions would benefit from."
literature
by mseok
"Academic literature discovery, synthesis, and bibliography management. Find papers, verify citations, create .bib files, download PDFs, and synthesize literature narratives. Includes OpenAlex API integration for structured scholarly queries."
insights-deck
by mseok
"Generate timestamped Codex insights report and Beamer presentation. Runs $insights, archives HTML, then builds a rhetoric-driven deck from the findings."
latex
by mseok
"LaTeX document compilation and management. When Codex needs to compile LaTeX documents (.tex files) for papers, presentations, or other academic content."
commit-splitter
by mseok
Split large sets of uncommitted changes into logical, well-organized commits. Use when the user has many uncommitted changes and wants structured commits, or proactively suggest when detecting a large diff that would benefit from splitting.
scientific-writing
by mseok
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
split-pdf
by mseok
Download, split, and deeply read academic PDFs. Use when asked to read, review, or summarize an academic paper. Splits PDFs into 4-page chunks, reads them in small batches, and produces structured reading notes — avoiding context window crashes and shallow comprehension.
validate-bib
by mseok
"Cross-reference \cite{} keys against .bib files or embedded \bibitem entries. Finds missing, unused, and typo'd citation keys. Deep verification mode spawns parallel agents for DOI/metadata validation at scale. Read-only in standard mode."
research-ideation
by mseok
"Generate structured research questions, testable hypotheses, and empirical strategies from a topic or dataset. Produces 3–5 ranked questions with identification strategies."
audit-template-compliance
by mseok
"Compare a project's LaTeX preamble against the working paper template. Reports missing features, conflicts, and redundancies. Optional --apply mode syncs changes interactively."
session-recap
by mseok
"End-of-session checklist. Checks for uncommitted changes, offers to update focus, project docs, context, and session log. Replaces the old stop reminder flow."
latex-autofix
by mseok
"LaTeX compilation with autonomous error resolution. Build artifacts go to out/, PDF is copied back to source directory. Parses logs, auto-fixes known errors (missing packages, font conflicts, citation issues, bad paths, stale cache), and runs citation audit on success."
code-archaeology
by mseok
"Systematically review and understand old code, data, and analysis files. For reviving old projects, auditing inherited code, or preparing for R&R."