mseok
@mseok
Public Skills
init-project
by mseok
"Bootstrap a new research project. Interview for details, scaffold directory structure, create Overleaf symlink, initialise git, and create project context files."
learn
by mseok
"Extract reusable knowledge from the current session into a persistent skill.\nUse when you discover something non-obvious, create a workaround, or develop\na multi-step workflow that future sessions would benefit from."
beamer-deck
by mseok
"Generate academic Beamer presentations with multi-agent review. Builds original themes, applies rhetoric principles, iterates until zero warnings."
split-pdf
by mseok
Download, split, and deeply read academic PDFs. Use when asked to read, review, or summarize an academic paper. Splits PDFs into 4-page chunks, reads them in small batches, and produces structured reading notes — avoiding context window crashes and shallow comprehension.
pre-submission-report
by mseok
"Run all quality checks and produce a single dated report before submission or sharing."
update-focus
by mseok
"Update current-focus.md with a structured session summary. Preserves the document's rich structure: weekly focus, session history rotation, open loops, mental state. Use at end of work sessions or when a session-end reminder appears."
retarget-journal
by mseok
"Retarget a paper to a different journal. Renames folders, swaps bib files, updates citation keys, reformats to target requirements, and compiles to verify."
update-project-doc
by mseok
"Update a project's own documentation (AGENTS.md, README.md, docs/*.md) to reflect its current state. Detects stale file trees, timestamps, counts, and next steps."
insights-deck
by mseok
"Generate timestamped Codex insights report and Beamer presentation. Runs $insights, archives HTML, then builds a rhetoric-driven deck from the findings."
validate-bib
by mseok
"Cross-reference \cite{} keys against .bib files or embedded \bibitem entries. Finds missing, unused, and typo'd citation keys. Deep verification mode spawns parallel agents for DOI/metadata validation at scale. Read-only in standard mode."
session-log
by mseok
"Create timestamped progress logs for research sessions. Detects multi-project sessions and creates separate logs per project. Enables continuity between Codex sessions."
todoist-roadmap-manager
by mseok
Manage Todoist roadmap execution for research programs. Use when tasks must be structured into multiple projects, labels standardized, milestone names normalized, due dates synchronized idempotently, or accidentally completed tasks restored.
project-deck
by mseok
"Create presentation decks to communicate project status. For supervisor meetings, coauthor handoffs, or documenting progress."
code-archaeology
by mseok
"Systematically review and understand old code, data, and analysis files. For reviving old projects, auditing inherited code, or preparing for R&R."
literature
by mseok
"Academic literature discovery, synthesis, and bibliography management. Find papers, verify citations, create .bib files, download PDFs, and synthesize literature narratives. Includes OpenAlex API integration for structured scholarly queries."
project-safety
by mseok
"Set up safety rules and folder structures for research projects. Prevent accidental data loss when Codex reorganizes files."
interview-me
by mseok
"Interactive interview to formalise a research idea into a structured specification with hypotheses and empirical strategy. Conversational — asks questions one at a time."
save-context
by mseok
"Save information from conversations to the user's task management context library. Use when the user says: 'save this to my context', 'remember this', 'add to my profile', 'update my current focus', 'add this person to my contacts', 'save this project info', or any variation of wanting to persist information for future AI sessions."
proofread
by mseok
"Academic proofreading for LaTeX papers. Grammar, notation consistency, citation format, tone, LaTeX issues, citation voice balance, and TikZ diagram review. Report-only — never edits source files."
code-review
by mseok
"Quality review for R and Python research scripts. 11-category scorecard covering reproducibility, structure, domain correctness, cross-language verification, and more. Report-only — never edits source files."
session-recap
by mseok
"End-of-session checklist. Checks for uncommitted changes, offers to update focus, project docs, context, and session log. Replaces the old stop reminder flow."
latex-autofix
by mseok
"LaTeX compilation with autonomous error resolution. Build artifacts go to out/, PDF is copied back to source directory. Parses logs, auto-fixes known errors (missing packages, font conflicts, citation issues, bad paths, stale cache), and runs citation audit on success."
commit-splitter
by mseok
Split large sets of uncommitted changes into logical, well-organized commits. Use when the user has many uncommitted changes and wants structured commits, or proactively suggest when detecting a large diff that would benefit from splitting.
quarto-deck
by mseok
"Generate Reveal.js HTML presentations from Markdown. Applies rhetoric principles (assertion titles, one idea per slide, narrative arc). Best for teaching, informal talks, and web-shareable decks."
scientific-writing
by mseok
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
devils-advocate
by mseok
"Challenge research assumptions and identify weaknesses in arguments. Stress-test papers before submission or revision."
audit-project-structure
by mseok
"Audit a research project's structure against the current init-project template. Reports missing directories, files, symlinks, and seed content. Report-only — except for rules sync (Phase 3.8) and permissions sync (Phase 3.11), which actively update the project."
modular-python-deep-learning
by mseok
Write and refactor modular, readable Python code for deep learning research (PyTorch/JAX), following Python philosophy (PEP 8/20) and Karpathy-style coding guidelines (think before coding, simplicity first, surgical changes, goal-driven execution). Use for structuring training/eval code, splitting monolithic scripts into modules, designing clean APIs/configs, improving maintainability, and making experiments reproducible and HPC-friendly.
latex
by mseok
"LaTeX document compilation and management. When Codex needs to compile LaTeX documents (.tex files) for papers, presentations, or other academic content."
humanizer
by mseok
Remove signs of AI-generated writing from text. Use when editing or reviewing text to make it sound more natural and human-written. Based on Wikipedia's comprehensive "Signs of AI writing" guide. Detects and fixes patterns including: inflated symbolism, promotional language, superficial -ing analyses, vague attributions, em dash overuse, rule of three, AI vocabulary words, negative parallelisms, and excessive conjunctive phrases.
research-ideation
by mseok
"Generate structured research questions, testable hypotheses, and empirical strategies from a topic or dataset. Produces 3–5 ranked questions with identification strategies."
single-paper-review
by mseok
Create a detailed single-paper summary note in Markdown (Obsidian-friendly). Use when asked for "paper review" meaning "논문 정리/요약", single-paper deep summary, or when the user wants method and results written with metric definitions (math + interpretation) and reusable figures/tables embedded from Attachments/.
session-close
by mseok
"End-of-session checklist. Checks for uncommitted changes, offers to update focus, project docs, context, and session log. Replaces the old stop reminder flow."
icml-reviewer
by mseok
Paper reviewer that evaluates machine learning research projects following official ICML reviewer guidelines. Provides comprehensive reviews with actionable feedback across all key dimensions: claims/evidence, relation to prior work, originality, significance, clarity, and reproducibility. Also provides formative feedback on incomplete drafts, proposals, and research code repositories. MANDATORY TRIGGERS: review paper, ICML review, paper review, evaluate paper, research paper feedback, ML paper review, conference review, academic review, paper critique, NeurIPS review, ICLR review, project proposal, research proposal, paper draft, early feedback, incomplete paper, work in progress, WIP review, review repo, review codebase, research project review
audit-template-compliance
by mseok
"Compare a project's LaTeX preamble against the working paper template. Reports missing features, conflicts, and redundancies. Optional --apply mode syncs changes interactively."
make-obsidian-base
by mseok
Create a new Obsidian category note and matching base file in one step for vaults that use Categories/.md plus Templates/Bases/.base. Use when the user asks to add a new category/base pair, wants a one-command setup like /make-obsidian-base [category-name], or wants consistent category scaffolding.
atlas
by mseok
"macOS-only AppleScript control for the ChatGPT Atlas desktop app. Use only when the user explicitly asks to control Atlas tabs/bookmarks/history on macOS and the \"ChatGPT Atlas\" app is installed; do not trigger for general browser tasks or non-macOS environments."