IOBRskill
by IOBR
End-to-end bulk RNA-seq / microarray tumor microenvironment (TME) analysis using the IOBR R package. Covers data preprocessing, gene annotation, TME deconvolution (CIBERSORT/MCPcounter/EPIC/xCell/ESTIMATE/TIMER/quanTIseq/IPS), signature scoring (PCA/ssGSEA/Z-score), ligand-receptor analysis, pathway enrichment, survival modeling, and Nature-style visualization. Use this skill when the user mentions: tumor microenvironment analysis, TME deconvolution, immune infiltration analysis, 肿瘤微环境分析, 肿瘤微环境解析, 免疫浸润分析, ligand-receptor analysis, 受体配体分析, IOBR, immune cell deconvolution, CIBERSORT, MCPcounter, ESTIMATE, or any bulk RNA-seq immuno-oncology workflow. Also trigger on /IOBRskill.