Delphine-L
@Delphine-L
Public Skills
HackMD Skill
by Delphine-L
HackMD Slide Mode
jupyter-notebook-analysis
by Delphine-L
Best practices for creating comprehensive Jupyter notebook data analyses with statistical rigor, outlier handling, and publication-quality visualizations
folder-organization
by Delphine-L
Best practices for organizing project folders, file naming conventions, and directory structure standards for research and development projects
obsidian
by Delphine-L
Integration with Obsidian vault for managing notes, tasks, and knowledge when working with Claude. Supports adding notes, creating tasks, and organizing project documentation.
galaxy-tool-wrapping
by Delphine-L
Expert in Galaxy tool wrapper development, XML schemas, Planemo testing, and best practices for creating Galaxy tools
managing-environments
by Delphine-L
Best practices for managing development environments including Python venv and conda. Always check environment status before installations and confirm with user before proceeding.
project-sharing
by Delphine-L
Prepare organized packages of project files for sharing at different levels - from summary PDFs to fully reproducible archives. Creates copies with cleaned notebooks, documentation, and appropriate file selection. After creating sharing package, all work continues in the main project directory.
conda-recipe
by Delphine-L
Expert in building and testing conda/bioconda recipes, including recipe creation, linting, dependency management, and debugging common build errors
claude-collaboration
by Delphine-L
Best practices for using Claude Code in team environments. Covers skill management, knowledge capture, version control, and collaborative workflows.
VGP Assembly Pipeline Skill
by Delphine-L
Vertebrate Genome Project
galaxy-workflow-development
by Delphine-L
Expert in Galaxy workflow development, testing, and IWC best practices. Create, validate, and optimize .ga workflows following Intergalactic Workflow Commission standards.
bioinformatics-fundamentals
by Delphine-L
Core bioinformatics concepts including SAM/BAM format, AGP genome assembly format, sequencing technologies (Hi-C, HiFi, Illumina), quality metrics, and common data processing patterns. Essential for debugging alignment, filtering, pairing issues, and AGP coordinate validation.
token-efficiency
by Delphine-L
Token optimization best practices for cost-effective Claude Code usage. Automatically applies efficient file reading, command execution, and output handling strategies. Includes model selection guidance (Opus for learning, Sonnet for development/debugging). Prefers bash commands over reading files.
galaxy-automation
by Delphine-L
BioBlend and Planemo expertise for Galaxy workflow automation. Galaxy API usage, workflow invocation, status checking, error handling, batch processing, and dataset management. Essential for any Galaxy automation project.
claude-skill-management
by Delphine-L
Expert guide for managing Claude Code global skills and commands. Use when creating new skills, symlinking to projects, updating existing skills, or organizing the centralized skill repository.