Delphine-L
@Delphine-L
Public Skills
HackMD Skill
by Delphine-L
HackMD Slide Mode
claude-collaboration
by Delphine-L
Best practices for using Claude Code in team environments. Covers skill management, knowledge capture, version control, and collaborative workflows.
jupyter-notebook-analysis
by Delphine-L
Best practices for creating comprehensive Jupyter notebook data analyses with statistical rigor, outlier handling, and publication-quality visualizations
token-efficiency
by Delphine-L
Token optimization best practices for cost-effective Claude Code usage. Automatically applies efficient file reading, command execution, and output handling strategies. Includes model selection guidance (Opus for learning, Sonnet for development/debugging). Prefers bash commands over reading files.
bioinformatics-fundamentals
by Delphine-L
Core bioinformatics concepts including SAM/BAM format, AGP genome assembly format, sequencing technologies (Hi-C, HiFi, Illumina), quality metrics, and common data processing patterns. Essential for debugging alignment, filtering, pairing issues, and AGP coordinate validation.
galaxy-tool-wrapping
by Delphine-L
Expert in Galaxy tool wrapper development, XML schemas, Planemo testing, and best practices for creating Galaxy tools
galaxy-workflow-development
by Delphine-L
Expert in Galaxy workflow development, testing, and IWC best practices. Create, validate, and optimize .ga workflows following Intergalactic Workflow Commission standards.
galaxy-automation
by Delphine-L
BioBlend and Planemo expertise for Galaxy workflow automation. Galaxy API usage, workflow invocation, status checking, error handling, batch processing, and dataset management. Essential for any Galaxy automation project.
conda-recipe
by Delphine-L
Expert in building and testing conda/bioconda recipes, including recipe creation, linting, dependency management, and debugging common build errors
managing-environments
by Delphine-L
Best practices for managing development environments including Python venv and conda. Always check environment status before installations and confirm with user before proceeding.
folder-organization
by Delphine-L
Best practices for organizing project folders, file naming conventions, and directory structure standards for research and development projects
VGP Assembly Pipeline Skill
by Delphine-L
Vertebrate Genome Project
claude-skill-management
by Delphine-L
Expert guide for managing Claude Code global skills and commands. Use when creating new skills, symlinking to projects, updating existing skills, or organizing the centralized skill repository.
project-sharing
by Delphine-L
Prepare organized packages of project files for sharing at different levels - from summary PDFs to fully reproducible archives. Creates copies with cleaned notebooks, documentation, and appropriate file selection. After creating sharing package, all work continues in the main project directory.
obsidian
by Delphine-L
Integration with Obsidian vault for managing notes, tasks, and knowledge when working with Claude. Supports adding notes, creating tasks, and organizing project documentation.