SergeiNikolenko

molecule-collection

"Use when reviewing SDF or molecule-property collections with bounded tables, filters, selected-molecule handoff, and Burette panels."

SergeiNikolenko 69 5 Updated 3mo ago

Resources

1
GitHub

Install

npx skillscat add sergeinikolenko/burette/molecule-collection

Install via the SkillsCat registry.

SKILL.md

Molecule Collection

Use this workflow for SDF sets, property tables, score tables, filtered
collections, and selected molecule review.

Workflow

  1. Prepare or receive a local SDF/CSV/JSON artifact outside Burette when
    computation is required.
  2. Validate the collection as a bounded molecular artifact before rendering.
  3. Render reviewed rows in a Burette side panel or open the collection as a
    normal workspace document.
  4. If the user selects a row, hand the selected molecule or derived structure
    back to open-workspace or molstar-scene.

Data Contract

Rows should stay compact and reviewable. Keep useful fields for exploration:

  • molecule id or title;
  • SMILES or source record id when safe;
  • score or property columns;
  • filter flags;
  • source path or run id.

Do not claim filtering or property calculation happened inside Burette unless a
Burette runtime actually performed it. Prefer external RDKit or workflow tools
for chemistry computation, then display the reviewed results in Burette.