Read-only R code review protocol for `.R` scripts. Checks code quality, reproducibility, domain correctness, tidyverse idioms, and professional standards; produces a report without editing. Use when user says "review this R script", "check the R code", "audit the analysis code", "code review on the R", or when an R file is touched as part of a paper submission. NOT for running the code — pair with `/audit-reproducibility` for numeric verification.
Install
npx skillscat add pedrohcgs/claude-code-my-workflow/review-r Install via the SkillsCat registry.
Review R Scripts
Run the comprehensive R code review protocol.
Steps
Identify scripts to review:
- If
$ARGUMENTSis a specific.Rfilename: review that file only - If
$ARGUMENTSisLectureN: review all R scripts matching that lecture - If
$ARGUMENTSisall: review all R scripts inscripts/R/andFigures/*/
- If
For each script, launch the
r-revieweragent with instructions to:- Follow the full protocol in the agent instructions
- Read
.claude/rules/r-code-conventions.mdfor current standards - Save report to
quality_reports/[script_name]_r_review.md
After all reviews complete, present a summary:
- Total issues found per script
- Breakdown by severity (Critical / High / Medium / Low)
- Top 3 most critical issues
IMPORTANT: Do NOT edit any R source files.
Only produce reports. Fixes are applied after user review.