File Ops
File manipulation and management
fzf
by dashed
Command-line fuzzy finder for interactive filtering of any list. Use when interactively selecting files, searching command history (CTRL-R), creating selection interfaces in scripts, building interactive menus, or integrating fuzzy search with tools like ripgrep, fd, and git. Triggers on mentions of fzf, fuzzy finder, ** completion, interactive filtering, or shell keybindings CTRL-T/CTRL-R/ALT-C.
metabolicfeatures
by pwwang
Performs enrichment analysis (GSEA-based) for metabolic pathways across different cell groups to identify significantly enriched pathways. Uses fast gene set enrichment analysis (fgsea package) to rank pathways by their association with specific clusters, conditions, or cell states. Generates summary plots and enrichment visualizations for biological interpretation.
skill-creator
by basher83
Guide for creating effective skills. This skill should be used when users want to create a new skill (or
modulescorecalculator
by pwwang
Configuration skill for immunopipe process
jj
by dashed
Jujutsu (jj) version control system - a Git-compatible VCS with novel features. Use when working with jj repositories, managing stacked/dependent commits, needing automatic rebasing with first-class conflict handling, using revsets to select commits, or wanting enhanced Git workflows. Triggers on mentions of 'jj', 'jujutsu', change IDs, operation log, or jj-specific commands.
metabolicinput
by pwwang
Pass-through process that prepares Seurat object for metabolic landscape analysis. Routes the processed Seurat object to downstream metabolic analysis processes (MetabolicExprImputation, MetabolicPathwayActivity, MetabolicFeatures, MetabolicPathwayHeterogeneity). Note: This process requires no direct configuration.
loadingrnafromseurat
by pwwang
Load pre-existing Seurat objects into the immunopipe pipeline instead of starting from raw count matrices via SampleInfo. This enables analysis on already processed single-cell RNA-seq data stored in Seurat R objects.
imaging-data-commons
by ImagingDataCommons
Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Invoke for any question about IDC collections, cancer imaging datasets, DICOM data access, radiology (CT, MR, PET) or pathology AI training sets, metadata queries, visualization, or license checks — even when the user doesn't explicitly mention "IDC". No authentication required.
pytidb
by pingcap
PyTiDB (pytidb) setup and usage for TiDB from Python. Covers connecting, table modeling (TableModel), CRUD, raw SQL, transactions, vector/full-text/hybrid search, auto-embedding, custom embedding functions, and reference templates/snippets (vector/hybrid/image) plus agent-oriented examples (RAG/memory/text2sql).
tidb-sql
by pingcap
Write, review, and adapt SQL for TiDB with correct handling of TiDB-vs-MySQL differences (VECTOR type + vector indexes/functions, full-text search, AUTO_RANDOM, optimistic/pessimistic transactions, foreign keys, views, DDL limitations, and unsupported MySQL features like procedures/triggers/events/GEOMETRY/SPATIAL). Use when generating SQL that must run on TiDB, migrating MySQL SQL to TiDB, or debugging TiDB SQL compatibility errors.
furusato
by kazukinagata
This skill manages furusato nozei (hometown tax) donations. Use when the user wants to register donation data, read donation receipts, check deduction limits, or manage their furusato nozei records. Trigger phrases: "ふるさと納税", "furusato", "寄附金", "寄付金", "ふるさと納税の控除", "寄附金受領証明書", "ワンストップ特例".
reading-payment-statement
by kazukinagata
支払調書の画像を読み取り構造化データを返す。 他のスキルから呼び出されるほか、直接ユーザーが呼び出すことも可能。
reading-receipt
by kazukinagata
レシート・領収書・ふるさと納税受領証明書の画像を読み取り構造化データを返す。 他のスキルから呼び出されるほか、直接ユーザーが呼び出すことも可能。
journal
by kazukinagata
This skill should be used when the user wants to record bookkeeping entries (仕訳), import transaction data from CSV files, receipts, or invoices, or manage their general ledger. Trigger phrases include: "仕訳を入力", "仕訳登録", "CSVを取り込む", "レシートを読み込む", "請求書を取り込む", "帳簿を付ける", "経費を記録", "売上を記録", "仕訳を修正", "仕訳を検索", "仕訳を削除", "取引を登録", "帳簿の初期化".
gather
by kazukinagata
This skill should be used when the user needs to know what documents to collect for their tax filing, wants a checklist of required documents, or asks where to obtain specific tax documents. Trigger phrases include: "必要書類", "書類を集める", "何を準備すればいい", "源泉徴収票はどこで", "書類チェックリスト", "確定申告に必要なもの", "書類収集", "準備するもの".
reading-withholding
by kazukinagata
源泉徴収票の画像を読み取り構造化データを返す。 他のスキルから呼び出されるほか、直接ユーザーが呼び出すことも可能。
cartographer
by kingbootoshi
Maps and documents codebases of any size by orchestrating parallel subagents. Creates docs/CODEBASE_MAP.md with architecture, file purposes, dependencies, and navigation guides. Updates CLAUDE.md with a summary. Use when user says "map this codebase", "cartographer", "/cartographer", "create codebase map", "document the architecture", "understand this codebase", or when onboarding to a new project. Automatically detects if map exists and updates only changed sections.
patch-diff-analyzer
by HacktronAI
Specialized in reverse-engineering compiled binaries (JARs, DLLs). Use this when the user asks to compare versions, find security fixes, or analyze binary patches.
spring-boot-4-migration
by adityamparikh
Guides Spring Boot version migrations: 2.7.x to 3.5.x, 3.5.x to 4.x, and minor upgrades within 4.x. Covers Java/Kotlin baseline upgrades, Jakarta EE namespace (javax to jakarta), Hibernate 5/6/7, Spring Security 5/6/7, modular starters, Jackson 3, Spring Framework 7, observability (Micrometer Tracing, OpenTelemetry), property and package relocations, JUnit 6, Testcontainers 2, MockitoBean, HTTP clients, resilience, AOT/native, API versioning, and OpenRewrite recipe automation. Supports all-at-once and gradual strategies with compatibility bridges. Java and Kotlin; Maven and Gradle. Trigger on requests like "upgrade/migrate to Spring Boot 3 or 4", "Spring Boot 2 to 3", "javax to jakarta", "upgrade to 4.1", "OpenRewrite Spring Boot", or any request moving a Spring Boot project to a newer major or minor version. Do NOT use for general Spring Boot development on a fixed version (new endpoints, services, JPA, tests) — use the spring-boot skill for that.
flightclaw
by jackculpan
Track flight prices using Google Flights data. Search flights, find cheapest dates, filter by airline/time/duration/price, track routes over time, and get alerts when prices drop. Also runs as an MCP server. Requires Python 3.10+ and the 'flights' and 'mcp' pip packages. Run setup.sh to install dependencies.
de-ai-ify
by BrianRWagner
Remove AI-generated jargon and restore human voice to text. Built from analyzing 1,000+ AI vs human content pieces.
last30days
by BrianRWagner
Research any topic across Reddit, X, and web from the last 30 days. Get current trends, real community sentiment, and actionable insights in 7 minutes vs 2 hours manual research.
homepage-audit
by BrianRWagner
Quick conversion audit for any homepage or landing page. Use when someone asks to "review my homepage," "audit my landing page," "why isn't my page converting," "check my website," "improve my homepage," or wants feedback on their marketing page.
youtube-summarizer
by BrianRWagner
Automatically fetch YouTube video transcripts, generate structured summaries, and send full transcripts to messaging platforms. Detects YouTube URLs and provides metadata, key insights, and downloadable transcripts.