File Ops
File manipulation and management
analyzing-mft-for-deleted-file-recovery
by mukul975
Analyze the NTFS Master File Table ($MFT) to recover metadata and content of deleted files by examining MFT record entries, $LogFile, $UsnJrnl, and MFT slack space using MFTECmd, analyzeMFT, and X-Ways Forensics.
analyzing-security-logs-with-splunk
by mukul975
Leverages Splunk Enterprise Security and SPL (Search Processing Language) to investigate security incidents through log correlation, timeline reconstruction, and anomaly detection. Covers Windows event logs, firewall logs, proxy logs, and authentication data analysis. Activates for requests involving Splunk investigation, SPL queries, SIEM log analysis, security event correlation, or log-based incident investigation.
analyzing-indicators-of-compromise
by mukul975
Analyzes indicators of compromise (IOCs) including IP addresses, domains, file hashes, URLs, and email artifacts to determine maliciousness confidence, campaign attribution, and blocking priority. Use when triaging IOCs from phishing emails, security alerts, or external threat feeds; enriching raw IOCs with multi-source intelligence; or making block/monitor/whitelist decisions. Activates for requests involving VirusTotal, AbuseIPDB, MalwareBazaar, MISP, or IOC enrichment pipelines.
analyzing-lnk-file-and-jump-list-artifacts
by mukul975
Analyze Windows LNK shortcut files and Jump List artifacts to establish evidence of file access, program execution, and user activity using LECmd, JLECmd, and manual binary parsing of the Shell Link Binary format.
run-smoke-tests
by cursor
Run Playwright smoke tests, debug failures, and verify fixes
use-modern-go
by JetBrains
Apply modern Go syntax guidelines based on project's Go version. Use when user ask for modern Go code guidelines.
ship-safe-scan
by asamassekou10
Quick scan for leaked secrets — API keys, passwords, tokens, database URLs. Use when the user wants to check for hardcoded secrets or exposed credentials.
geniml
by K-Dense-AI
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
fda-database
by K-Dense-AI
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
anndata
by K-Dense-AI
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
citation-management
by K-Dense-AI
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
depmap
by K-Dense-AI
Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.
geo-database
by K-Dense-AI
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
clinvar-database
by K-Dense-AI
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
biopython
by K-Dense-AI
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
flowio
by K-Dense-AI
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
dnanexus-integration
by K-Dense-AI
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
gget
by K-Dense-AI
"Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices."
cosmic-database
by K-Dense-AI
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
bindingdb-database
by K-Dense-AI
Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), compound (SMILES/name), or pathogen. Essential for drug discovery, lead optimization, polypharmacology analysis, and structure-activity relationship (SAR) studies.
exploratory-data-analysis
by K-Dense-AI
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
Obsidian Vault
by mattpocock
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chinese-quote-converter
by brycewang-stanford
Convert English straight quotation marks ("...") to Chinese curved quotation marks ("..." U+201C/D). Use when processing Chinese text documents, markdown files, or any content that needs proper Chinese typography with directional quotes. Triggers on keywords like "转换引号", "中文引号", "英文引号转中文", "quote conversion", "convert quotes".
anti-hallucination
by brycewang-stanford
ALWAYS activate this skill. Apply these rules to every task regardless of domain. This skill governs how Claude Code verifies information, writes code, references documentation, and avoids fabricating functions, arguments, APIs, file paths, data structures, or facts. These rules override any inclination to guess.