File Ops
File manipulation and management
jujutsu
by cryfs
Guide to Jujutsu (jj) version control system. Use when working with commits, branches, pull requests, PRs, version control, rebasing, pushing, or when the user mentions jj, git, or version control operations.
super-swarm-spark
by am-will
Only to be triggered by explicit super-swarm-spark commands.
retype
by knoopx
Refactors TypeScript codebases with AST-aware rename, extract, and reference finding. Use for moving functions between files, renaming across codebase, or finding all usages of a symbol.
flowio-flow-cytometry
by jaechang-hits
"Parse and create FCS (Flow Cytometry Standard) files v2.0-3.1. Read event data as NumPy arrays, extract channel metadata, handle multi-dataset files, export to CSV/FCS. For advanced gating and compensation use FlowKit."
encode-database
by jaechang-hits
"Query the ENCODE Portal REST API for regulatory genomics data: TF ChIP-seq experiments, ATAC-seq/DNase-seq accessibility peaks, histone mark tracks, and RNA-seq datasets across 1000+ cell types and tissues. Search experiments by assay, biosample, or target protein; download BED/bigWig files; retrieve candidate cis-regulatory elements (cCREs) from ENCODE SCREEN by genomic region or gene. Use for finding regulatory tracks to annotate variants, identifying open chromatin in a cell type of interest, and downloading peak files for ChIP-seq or ATAC-seq analysis. For regulatory variant scoring use regulomedb-database; for GWAS associations use gwas-database."
geniml
by jaechang-hits
"Geniml is a Python library for genomic interval machine learning. Train and apply region2vec embeddings to convert BED file regions into numeric vectors, load and index genomic interval datasets for ML pipelines, search embedding spaces with BEDSpace, and evaluate embedding quality. Use for chromatin accessibility clustering, regulatory element classification, cross-sample region comparison, and building ML models on genomic intervals."
gtars
by jaechang-hits
"GTARS is a Rust-backed Python library for fast genomic token arithmetic and BED file processing. Perform high-performance BED file I/O, genomic interval set operations (intersect, merge, complement, subtract), tokenization of genomic regions against a universe, and universe construction. Use for preprocessing large BED file collections, building token vocabularies for ML pipelines, and computing interval statistics at scale."
gget-genomic-databases
by jaechang-hits
"Unified CLI/Python interface to 20+ genomic databases. Use for quick gene lookups (Ensembl search/info/seq), BLAST/BLAT sequence alignment, AlphaFold structure prediction, enrichment analysis (Enrichr), disease/drug associations (OpenTargets), single-cell data (CELLxGENE), cancer genomics (cBioPortal/COSMIC), and expression correlation (ARCHS4). Covers genomics, proteomics, and disease domains. For batch processing or advanced BLAST use biopython; for multi-database Python SDK workflows use bioservices."
cnvkit-copy-number
by jaechang-hits
"Detect somatic copy number variants (CNVs) from WES, WGS, or targeted sequencing BAM files with CNVkit v0.9.x. Pipeline: calculate bin-level coverage in target/antitarget regions, normalize against a reference, segment copy ratios with CBS or HMM, call amplifications and deletions, generate scatter/diagram plots, estimate tumor purity and ploidy, and export to VCF/SEG. Both CLI and Python API (cnvlib) shown. Use GATK CNV instead for deep WGS with population-scale controls; use CNVkit for targeted or exome sequencing where antitarget bins are critical."
docx
by appautomaton
"Comprehensive document creation, editing, and analysis with support for tracked changes, comments, formatting preservation, and text extraction. When Claude needs to work with professional documents (.docx files) for: (1) Creating new documents, (2) Modifying or editing content, (3) Working with tracked changes, (4) Adding comments, or any other document tasks"
xlsx
by appautomaton
"Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualization. When Claude needs to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv, etc) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing data, (3) Modify existing spreadsheets while preserving formulas, (4) Data analysis and visualization in spreadsheets, or (5) Recalculating formulas"
skill-creator
by openclaw
Create or update AgentSkills. Use when designing, structuring, or packaging skills with scripts, references, and assets.
wacli
by openclaw
Send WhatsApp messages to other people or search/sync WhatsApp history via the wacli CLI (not for normal user chats).
things-mac
by openclaw
Manage Things 3 via the things CLI on macOS (add/update projects+todos via URL scheme; read/search/list from the local Things database). Use when a user asks OpenClaw to add a task to Things, list inbox/today/upcoming, search tasks, or inspect projects/areas/tags.
discord
by openclaw
"Discord ops via the message tool (channel=discord)."
web-design-guidelines
by tech-leads-club
Review UI code for Web Interface Guidelines compliance. Use when asked to "review my UI", "check accessibility", "audit design", "review UX", or "check my site against best practices".
aws-advisor
by tech-leads-club
Expert AWS Cloud Advisor for architecture design, security review, and implementation guidance. Leverages AWS MCP tools for accurate, documentation-backed answers. Use when user asks about AWS architecture, security, service selection, migrations, troubleshooting, or learning AWS. Triggers on AWS, Lambda, S3, EC2, ECS, EKS, DynamoDB, RDS, CloudFormation, CDK, Terraform, Serverless, SAM, IAM, VPC, API Gateway, or any AWS service.
jira-assistant
by tech-leads-club
Expert in Jira operations using Atlassian MCP - automatically detects workspace Jira configuration or prompts for project details. Use for searching, creating, updating issues, managing status transitions, and handling tasks.
docs-writer
by tech-leads-club
Use this skill for writing, reviewing, and editing documentation (/docs directory or any .md file).
skill-creator
by tech-leads-club
Guide for creating effective AI agent skills. Use when users want to create a new skill (or update an existing skill) that extends an AI agent's capabilities with specialized knowledge, workflows, or tool integrations. Works with any agent that supports the SKILL.md format (Claude Code, Cursor, Roo, Cline, Windsurf, etc.). Triggers on "create skill", "new skill", "package knowledge", "skill for".
react-composition-patterns
by tech-leads-club
React composition patterns that scale. Use when refactoring components with boolean prop proliferation, building flexible component libraries, or designing reusable APIs. Triggers on tasks involving compound components, render props, context providers, or component architecture. Includes React 19 API changes.
component-flattening-analysis
by tech-leads-club
Identifies and fixes component hierarchy issues by detecting orphaned classes in root namespaces and ensuring components exist only as leaf nodes. Use when analyzing component structure, finding orphaned classes, flattening component hierarchies, removing component nesting, or when the user asks about component flattening, orphaned classes, or component structure cleanup.
security-ownership-map
by tech-leads-club
'Analyze git repositories to build a security ownership topology (people-to-file), compute bus factor and sensitive-code ownership, and export CSV/JSON for graph databases and visualization. Trigger only when the user explicitly wants a security-oriented ownership or bus-factor analysis grounded in git history (for example: orphaned sensitive code, security maintainers, CODEOWNERS reality checks for risk, sensitive hotspots, or ownership clusters). Do not trigger for general maintainer lists or non-security ownership questions.'
docs-style
by continuedev
Style guidelines for writing and updating documentation. Use when writing new docs, updating existing docs, or reviewing docs for quality.