Database
Database management and queries
bioservices
by K-Dense-AI
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
cellxgene-census
by K-Dense-AI
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.
alphafold-database
by K-Dense-AI
Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
etetoolkit
by K-Dense-AI
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
chembl-database
by K-Dense-AI
Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.
ensembl-database
by K-Dense-AI
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
code-review-assistant
by ArabelaTso
Conduct comprehensive code reviews identifying bugs, security issues, performance problems, code quality concerns, and best practice violations. Use when reviewing pull requests, examining code changes, evaluating new code, assessing code quality, or providing feedback on implementations. Analyzes code for correctness, security vulnerabilities, performance bottlenecks, maintainability issues, test coverage, documentation quality, and adherence to coding standards. Produces structured markdown reviews with categorized findings, severity ratings, specific examples, and actionable recommendations. Triggers when users ask to review code, check pull requests, evaluate implementations, find bugs, or assess code quality.
code-optimizer
by ArabelaTso
Analyzes and optimizes code for better performance, memory usage, and efficiency. Use when code is slow, memory-intensive, or inefficient. Supports Python and Java optimization including execution speed improvements, memory reduction, database query optimization, and I/O efficiency. Provides before/after examples with detailed explanations of why optimizations work, complexity analysis, and measurable performance improvements.
kaizen:analyse-problem
by NeoLabHQ
Comprehensive A3 one-page problem analysis with root cause and action plan
fpf:query
by NeoLabHQ
"Search the FPF knowledge base and display hypothesis details with assurance information"
kaizen:why
by NeoLabHQ
Iterative Five Whys root cause analysis drilling from symptoms to fundamentals
pinecone
by NousResearch
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces. Low latency (<100ms p95). Use for production RAG, recommendation systems, or semantic search at scale. Best for serverless, managed infrastructure.
chroma
by NousResearch
Open-source embedding database for AI applications. Store embeddings and metadata, perform vector and full-text search, filter by metadata. Simple 4-function API. Scales from notebooks to production clusters. Use for semantic search, RAG applications, or document retrieval. Best for local development and open-source projects.
notion
by NousResearch
Notion API for creating and managing pages, databases, and blocks via curl. Search, create, update, and query Notion workspaces directly from the terminal.
performance-analysis
by rsmdt
Measurement approaches, profiling tools, optimization patterns, and capacity planning. Use when diagnosing performance issues, establishing baselines, identifying bottlenecks, or planning for scale. Always measure before optimizing.
data-modeling
by rsmdt
Schema design, entity relationships, normalization, and database patterns. Use when designing database schemas, modeling domain entities, deciding between normalized and denormalized structures, choosing between relational and NoSQL approaches, or planning schema migrations. Covers ER modeling, normal forms, and data evolution strategies.
notion-knowledge-capture
by Prat011
Transforms conversations and discussions into structured documentation pages in Notion. Captures insights, decisions, and knowledge from chat context, formats appropriately, and saves to wikis or databases with proper organization and linking for easy discovery.
notion-spec-to-implementation
by Prat011
Turns product or tech specs into concrete Notion tasks that Claude code can implement. Breaks down spec pages into detailed implementation plans with clear tasks, acceptance criteria, and progress tracking to guide development from requirements to completion.
code-review
by getsentry
Perform code reviews following Sentry engineering practices. Use when reviewing pull requests, examining code changes, or providing feedback on code quality. Covers security, performance, testing, and design review.
code-review
by getsentry
Perform code reviews following Sentry engineering practices. Use when reviewing pull requests, examining code changes, or providing feedback on code quality. Covers security, performance, testing, and design review.
django-perf-review
by getsentry
Django performance code review. Use when asked to "review Django performance", "find N+1 queries", "optimize Django", "check queryset performance", "database performance", "Django ORM issues", or audit Django code for performance problems.
ddia-systems
by wondelai
'Design data systems by understanding storage engines, replication, partitioning, transactions, and consistency models. Use when the user mentions "database choice", "replication lag", "partitioning strategy", "consistency vs availability", or "stream processing". Covers data models, batch/stream processing, and distributed consensus. For system design, see system-design. For resilience, see release-it.'
clean-architecture
by wondelai
'Structure software around the Dependency Rule: source code dependencies point inward from frameworks to use cases to entities. Use when the user mentions "architecture layers", "dependency rule", "ports and adapters", "hexagonal architecture", "use case boundary", "onion architecture", "screaming architecture", or "framework independence". Also trigger when decoupling business logic from databases or frameworks, defining module boundaries, or debating where to put business rules. Covers component principles, boundaries, and SOLID. For code quality, see clean-code. For domain modeling, see domain-driven-design.'
system-design
by wondelai
'Design scalable distributed systems using structured approaches for load balancing, caching, database scaling, and message queues. Use when the user mentions "system design", "scale this", "high availability", "rate limiter", or "design a URL shortener". Covers common system designs and back-of-the-envelope estimation. For data fundamentals, see ddia-systems. For resilience, see release-it.'