Processing
Data transformation and parsing
single2spatial-spatial-mapping
by Starlitnightly
Map scRNA-seq atlases onto spatial transcriptomics slides using omicverse's Single2Spatial workflow for deep-forest training, spot-level assessment, and marker visualisation.
bulk-wgcna-analysis-with-omicverse
by Starlitnightly
Assist Claude in running PyWGCNA through omicverse—preprocessing expression matrices, constructing co-expression modules, visualising eigengenes, and extracting hub genes.
omicverse-visualization-for-bulk-color-systems-and-single-cell-d
by Starlitnightly
Guide users through OmicVerse plotting utilities showcased in the bulk, color system, and single-cell visualization tutorials, including venn/volcano charts, palette selection, and advanced embedding layouts.
bulk-rna-seq-deseq2-analysis-with-omicverse
by Starlitnightly
Walk Claude through PyDESeq2-based differential expression, including ID mapping, DE testing, fold-change thresholding, and enrichment visualisation.
spatial-transcriptomics-tutorials-with-omicverse
by Starlitnightly
Guide users through omicverse's spatial transcriptomics tutorials covering preprocessing, deconvolution, and downstream modelling workflows across Visium, Visium HD, Stereo-seq, and Slide-seq datasets.
single-cell-cellphonedb-communication-mapping
by Starlitnightly
Run omicverse's CellPhoneDB v5 wrapper on annotated single-cell data to infer ligand-receptor networks and produce CellChat-style visualisations.
websocket-realtime
by rohitg00
Real-time communication patterns with WebSocket, Socket.io, Server-Sent Events, and scaling strategies
create-ex
by therealXiaomanChu
Distill an ex-partner into an AI Skill. Import WeChat history, photos, social media posts, generate Relationship Memory + Persona, with continuous evolution. 把前任蒸馏成 AI Skill，导入微信聊天记录、照片、朋友圈，生成 Relationship Memory + Persona，支持持续进化。
nextjs-mastery
by rohitg00
Next.js 14+ App Router patterns including RSC, ISR, middleware, parallel routes, and data fetching
analysis-planning
by nimrodfisher
Structure analysis approach before starting work. Use when receiving new analysis requests, breaking down complex questions into steps, or planning iterative analysis workflows.
impact-quantification
by nimrodfisher
Estimate and communicate business impact of insights. Use when sizing opportunities discovered in analysis, calculating ROI of recommended actions, or prioritizing initiatives by potential impact.
mcp-builder
by ThinkInAIXYZ
Guide for creating high-quality MCP (Model Context Protocol) servers that enable LLMs to interact with external services through well-designed tools. Use when building MCP servers to integrate external APIs or services, whether in Python (FastMCP) or Node/TypeScript (MCP SDK).
sap-datasphere
by secondsky
Comprehensive plugin for SAP Datasphere development with 3 specialized agents, 5 slash commands, and validation hooks. Use when building data warehouses on SAP BTP, creating analytic models, configuring data flows and replication flows, setting up connections to SAP and third-party systems, managing spaces and users, implementing data access controls, using the datasphere CLI, creating data products for the marketplace, or monitoring data integration tasks. Covers Data Builder (graphical/SQL views, local/remote tables, transformation flows), Business Builder (business entities, consumption models), analytic models (dimensions, measures, hierarchies), 40+ connection types (SAP S/4HANA, BW/4HANA, HANA Cloud, AWS, Azure, GCP, Kafka, Generic HTTP), real-time replication, task chains, content transport, CLI automation, catalog governance, and data marketplace. Includes 2025 features: Generic HTTP connections, REST API tasks in task chains, SAP Business Data Cloud integration. Keywords: sap datasphere, data warehouse cloud, dwc, data builder, business builder, analytic model, graphical view, sql view, transformation flow, replication flow, data flow, task chain, remote table, local table, sap btp data warehouse, datasphere connection, datasphere space, data access control, elastic compute node, sap analytics cloud integration, datasphere cli, data products, data marketplace, catalog, governance
architecture-design
by Galaxy-Dawn
Use ONLY when creating NEW registrable components in ML projects that require Factory/Registry patterns. ✅ USE when: - Creating a new Dataset class (needs @register_dataset) - Creating a new Model class (needs @register_model) - Creating a new module directory with init.py factory - Initializing a new ML project structure from scratch - Adding new component types (Augmentation, CollateFunction, Metrics) ❌ DO NOT USE when: - Modifying existing functions or methods - Fixing bugs in existing code - Adding helper functions or utilities - Refactoring without adding new registrable components - Simple code changes to a single file - Modifying configuration files - Reading or understanding existing code Key indicator: Does the task require @register_* decorator or Factory pattern? If no, skip this skill.
kaggle-learner
by Galaxy-Dawn
This skill should be used when the user asks to "learn from Kaggle", "study Kaggle solutions", "analyze Kaggle competitions", or mentions Kaggle competition URLs. Provides access to extracted knowledge from winning Kaggle solutions across NLP, CV, time series, tabular, and multimodal domains.
Plugin Structure
by Galaxy-Dawn
This skill should be used when the user asks to "create a plugin", "scaffold a plugin", "understand plugin structure", "organize plugin components", "set up plugin.json", "use ${CLAUDE_PLUGIN_ROOT}", "add commands/agents/skills/hooks", "configure auto-discovery", or needs guidance on plugin directory layout, manifest configuration, component organization, file naming conventions, or Claude Code plugin architecture best practices.
create-plan
by antinomyhq
Generate detailed implementation plans for complex tasks. Creates comprehensive strategic plans in Markdown format with objectives, step-by-step implementation tasks using checkbox format, verification criteria, risk assessments, and alternative approaches. All plans MUST be validated using the included validation script. Use when users need thorough analysis and structured planning before implementation, when breaking down complex features into actionable steps, or when they explicitly ask for a plan, roadmap, or strategy. Strictly planning-focused with no code modifications.
loki-mode
by asklokesh
Multi-agent autonomous startup system. Triggers on "Loki Mode". Takes PRD to deployed product with zero human intervention. Requires --dangerously-skip-permissions flag.
analysis-qa-checklist
by nimrodfisher
Pre-delivery quality assurance for analysis work. Use when reviewing analysis before sharing with stakeholders, checking for completeness, validating assumptions, or ensuring clarity of recommendations.
MCP Integration
by Galaxy-Dawn
This skill should be used when the user asks to "add MCP server", "integrate MCP", "configure MCP in plugin", "use .mcp.json", "set up Model Context Protocol", "connect external service", mentions "${CLAUDE_PLUGIN_ROOT} with MCP", or discusses MCP server types (SSE, stdio, HTTP, WebSocket). Provides comprehensive guidance for integrating Model Context Protocol servers into Claude Code plugins for external tool and service integration.
react-19
by Gentleman-Programming
React 19 patterns with React Compiler. Trigger: When writing React components - no useMemo/useCallback needed.
Complete Rust Development
by Dicklesworthstone
A comprehensive skill for Rust development that combines error handling, testing, and logging patterns. Demonstrates the 'includes' composition feature by merging content from multiple standalone skills.
whodb
by clidey
Database operations including querying, schema exploration, and data analysis. Activates for tasks involving PostgreSQL, MySQL, MariaDB, SQLite, MongoDB, Redis, Elasticsearch, or ClickHouse databases.
chain-estimation-decision-storytelling
by lyndonkl
Use when making high-stakes decisions under uncertainty that require stakeholder buy-in. Invoke when evaluating strategic options (build vs buy, market entry, resource allocation), quantifying tradeoffs with uncertain outcomes, justifying investments with expected value analysis, pitching recommendations to decision-makers, or creating business cases with cost-benefit estimates. Use when user mentions "should we", "ROI analysis", "make a case for", "evaluate options", "expected value", "justify decision", or needs to combine estimation, decision analysis, and persuasive communication.