Processing
Data transformation and parsing
bio-chipseq-differential-binding
by GPTomics
Differential binding analysis using DiffBind. Compare ChIP-seq peaks between conditions with statistical rigor. Requires replicate samples. Outputs differentially bound regions with fold changes and p-values. Use when comparing ChIP-seq binding between conditions.
rust-learner
by actionbook
"Use when asking about Rust versions or crate info. Keywords: latest version, what's new, changelog, Rust 1.x, Rust release, stable, nightly, crate info, crates.io, lib.rs, docs.rs, API documentation, crate features, dependencies, which crate, what version, Rust edition, edition 2021, edition 2024, cargo add, cargo update, 最新版本, 版本号, 稳定版, 最新, 哪个版本, crate 信息, 文档, 依赖, Rust 版本, 新特性, 有什么特性"
bio-single-cell-splicing
by GPTomics
Analyzes alternative splicing at single-cell resolution using BRIE2 for probabilistic PSI estimation or leafcutter2 for cluster-based analysis with NMD detection. Identifies cell-type-specific splicing patterns. Use when analyzing isoform usage in scRNA-seq or finding splicing differences between cell populations.
bio-atac-seq-differential-accessibility
by GPTomics
Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. Use when comparing chromatin accessibility between treatment groups, cell types, or developmental stages in ATAC-seq experiments.
bio-alignment-pairwise
by GPTomics
Perform pairwise sequence alignment using Biopython Bio.Align.PairwiseAligner. Use when comparing two sequences, finding optimal alignments, scoring similarity, and identifying local or global matches between DNA, RNA, or protein sequences.
mysql
by sanjay3290
"Execute read-only SQL queries against multiple MySQL databases. Use when: (1) querying MySQL databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety."
clay-data-handling
by Dicklesworthstone
Implement Clay PII handling, data retention, and GDPR/CCPA compliance patterns. Use when handling sensitive data, implementing data redaction, configuring retention policies, or ensuring compliance with privacy regulations for Clay integrations. Trigger with phrases like "clay data", "clay PII", "clay GDPR", "clay data retention", "clay privacy", "clay CCPA".
bear-notes
by elizaOS
Create, search, and manage Bear notes via grizzly CLI.
discord
by elizaOS
"Use when you need to control Discord from Otto via the discord tool: send messages, react, post or upload stickers, upload emojis, run polls, manage threads/pins/search, create/edit/delete channels and categories, fetch permissions or member/role/channel info, set bot presence/activity, or handle moderation actions in Discord DMs or channels."
static-analysis
by elizaOS
"Static analysis toolkit with CodeQL, Semgrep, and SARIF parsing for security vulnerability detection. Use when running static analysis scans, writing custom detection rules, or processing analysis results."
captions
by ZeroPointRepo
Extract closed captions and subtitles from YouTube videos. Use when the user asks for captions, closed captions, CC, accessibility text, or wants to read what was said in a video. Supports timestamps and multiple languages. Great for deaf/HoH accessibility, content review, quoting, and translation.
gifgrep
by elizaOS
Search GIF providers with CLI/TUI, download results, and extract stills/sheets.
openai-whisper-api
by elizaOS
Transcribe audio via OpenAI Audio Transcriptions API (Whisper).
model-usage
by elizaOS
Use CodexBar CLI local cost usage to summarize per-model usage for Codex or Claude, including the current (most recent) model or a full model breakdown. Trigger when asked for model-level usage/cost data from codexbar, or when you need a scriptable per-model summary from codexbar cost JSON.
ordercli
by elizaOS
Foodora-only CLI for checking past orders and active order status (Deliveroo WIP).
data-engineering
by rohitg00
Data engineering patterns for ETL pipelines, data warehousing, Apache Spark, and data quality validation
aiox-data-engineer
by SynkraAI
Database Architect & Operations Engineer (Dara). Use for database design, schema architecture, Supabase configuration, RLS policies, migrations, query optimization, data modelin...
notion
by elizaOS
Notion API for creating and managing pages, databases, and blocks.
gemini
by elizaOS
Gemini CLI for one-shot Q&A, summaries, and generation.
bluebubbles
by elizaOS
Use when you need to send or manage iMessages via BlueBubbles (recommended iMessage integration). Calls go through the generic message tool with channel="bluebubbles".
cbioportal-database
by jaechang-hits
"Access TCGA and other cancer genomics datasets via cBioPortal REST API. Retrieve somatic mutations, copy number alterations, gene expression profiles, and clinical data (survival, stage, treatment) for thousands of cancer studies. Use for tumor mutation burden analysis, oncoprint queries, and survival analysis. For population variant frequencies use gnomad-database; for drug-gene interactions use dgidb-database."
Resume Section Builder
by Paramchoudhary
Create targeted resume sections optimized for different experience levels and roles
mcp-apps-builder
by mcp-use
MANDATORY for ALL MCP server work - mcp-use framework best practices and patterns. READ THIS FIRST before any MCP server work, including: - Creating new MCP servers - Modifying existing MCP servers (adding/updating tools, resources, prompts, widgets) - Debugging MCP server issues or errors - Reviewing MCP server code for quality, security, or performance - Answering questions about MCP development or mcp-use patterns - Making ANY changes to server.tool(), server.resource(), server.prompt(), or widgets This skill contains critical architecture decisions, security patterns, and common pitfalls. Always consult the relevant reference files BEFORE implementing MCP features.
erc-8004
by BankrBot
Register AI agents on Ethereum mainnet using ERC-8004 (Trustless Agents). Use when the user wants to register their agent identity on-chain, create an agent profile, claim an agent NFT, set up agent reputation, or make their agent discoverable. Handles bridging ETH to mainnet, IPFS upload, and on-chain registration.