Processing
Data transformation and parsing
x-df
by x-cmd
Enhanced df combining disk usage and mount info. Supports CSV, TSV, and TUI with filesystem type detection. Dependency: This is an x-cmd module. Install x-cmd first (see x-cmd skill for installation options).
formatter-development
by biomejs
Guide for implementing formatting rules using Biome's IR-based formatter infrastructure. Use when working on formatters for JavaScript, CSS, JSON, HTML, or other languages. Examples:<example>User needs to implement formatting for a new syntax node</example><example>User wants to handle comments in formatted output</example><example>User is comparing Biome's formatting against Prettier</example>
biopython
by K-Dense-AI
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
code-formatting
by pollinations
Format code on the current branch using Biome. Use when asked to format, lint, or clean up code before committing or creating a PR.
model-management
by pollinations
"Add, update, or remove text/image/video models. Handles any provider."
arboreto
by K-Dense-AI
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
etetoolkit
by K-Dense-AI
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
cosmic-database
by K-Dense-AI
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
exploratory-data-analysis
by K-Dense-AI
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
mintlify
by Arize-ai
Build and maintain documentation sites with Mintlify. Use when
typescript-tooling-migration
by Arize-ai
Migrate or upgrade TypeScript tooling in the Phoenix monorepo. Use when upgrading TypeScript versions, switching tools (ESLint to oxlint, Prettier to oxfmt), upgrading bundlers (Vite, esbuild), or making major dependency upgrades. Triggers on requests to migrate, upgrade, or replace TypeScript/JavaScript tooling.
bio-atac-seq-differential-accessibility
by GPTomics
Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. Use when comparing chromatin accessibility between treatment groups, cell types, or developmental stages in ATAC-seq experiments.
security-and-hardening
by addyosmani
Use when handling user input, authentication, data storage, or external integrations. Use when building any feature that accepts untrusted data, manages user sessions, or interacts with third-party services.
mcp-cli
by github
Interface for MCP (Model Context Protocol) servers via CLI. Use when you need to interact with external tools, APIs, or data sources through MCP servers, list available MCP servers/tools, or call MCP tools from command line.
quasi-coder
by github
'Expert 10x engineer skill for interpreting and implementing code from shorthand, quasi-code, and natural language descriptions. Use when collaborators provide incomplete code snippets, pseudo-code, or descriptions with potential typos or incorrect terminology. Excels at translating non-technical or semi-technical descriptions into production-quality code.'
fabric-lakehouse
by github
'Use this skill to get context about Fabric Lakehouse and its features for software systems and AI-powered functions. It offers descriptions of Lakehouse data components, organization with schemas and shortcuts, access control, and code examples. This skill supports users in designing, building, and optimizing Lakehouse solutions using best practices.'
youtube-ads
by kostja94
When the user wants to run YouTube ads, set up TrueView or Bumper campaigns, or optimize video ad creative. Also use when the user mentions "YouTube ads," "TrueView," "Bumper ads," "YouTube Discovery," "video ads," "YouTube campaign," or "in-feed ads."
changelog
by BasedHardware
"Generate changelog entries. Use on releases or PR merges. Parses git commits, categorizes changes, formats changelog entries, and updates CHANGELOG.md."
senior-data-engineer
by borghei
Expert data engineering covering data pipelines, ETL/ELT, data warehousing, streaming, and data quality.
clinicaltrials-database
by K-Dense-AI
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
biorxiv-database
by K-Dense-AI
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
media-processing
by mrgoonie
Process multimedia files with FFmpeg (video/audio encoding, conversion, streaming, filtering, hardware acceleration) and ImageMagick (image manipulation, format conversion, batch processing, effects, composition). Use when converting media formats, encoding videos with specific codecs (H.264, H.265, VP9), resizing/cropping images, extracting audio from video, applying filters and effects, optimizing file sizes, creating streaming manifests (HLS/DASH), generating thumbnails, batch processing images, creating composite images, or implementing media processing pipelines. Supports 100+ formats, hardware acceleration (NVENC, QSV), and complex filtergraphs.
gtm-strategy
by kostja94
When the user wants to plan go-to-market strategy, GTM framework, or market entry. Also use when the user mentions "GTM," "go-to-market," "market entry," "new market," "repositioning," "PLG," "sales-led," "product-led," "marketing-led," "ICP," "buyer persona," "GTM motion," or "market expansion."
diagram-generation
by BasedHardware
"Mermaid diagram generation for architecture visualization, data flow diagrams, and component relationships. Use for documentation, PR descriptions, and architectural analysis."