Comments
Code comments and annotations
resolve-pr-comments
by Tristan578
Fetch ALL unresolved review comments on a PR, fix code issues, reply to EVERY comment on its thread, then verify replies are visible. Use after pushing, before declaring PR work complete.
babysit-prs
by Tristan578
Monitor open PRs for CI failures and review comments, then fix issues automatically. Use when PRs need to be driven to green — checks CI status, Sentry comments, merge conflicts, and applies fixes.
pr-green-machine
by Tristan578
Drive all open PRs to merge-ready state — fixes CI failures, resolves Sentry comments, clears merge conflicts. Use when multiple PRs need to go green or when asked to "clean up PRs", "fix all PRs", or "make PRs mergeable".
resolve-all-pr-comments
by Tristan578
Scan ALL open PRs for unreplied Sentry/Copilot comments and resolve them in batch
peekaboo
by Bitterbot-AI
"Capture screenshots, inspect UI elements, drive mouse/keyboard input, and manage macOS apps and windows with the Peekaboo CLI. Use when automating macOS UI interactions, taking annotated screenshots, clicking UI elements by ID, typing text, controlling app windows, or navigating menus and Dock items."
documentation
by EpicenterHQ
In-code documentation, folder READMEs, and code comments. Use when writing README.md files, JSDoc comments, or explaining code organization.
estimate-jira
by ag-grid
Estimate complexity, effort, and risks for JIRA tickets, features, or projects. Generates structured reports with time estimates, dependencies, risk analysis, and known unknowns. Use when user asks to "estimate", "size", or "analyze complexity" of work items.
chart-defaults
by ag-grid
'Find the actual runtime default value of any AG Charts configuration option, and keep JSDoc Default: markers accurate. Use when documenting a default, verifying a change has not altered one, writing tests against default behaviour, or auditing whether a TypeScript comment matches the theme template.'
project-management
by dotnet
'GitHub issue and project-board management for the dotnet/msbuild repo. Use when asked to file/triage/update issues, post comments, amend issue bodies, move sprints, bulk-update project board fields, or audit items by sprint/status/assignee.'
multithreaded-task-migration
by dotnet
Guide for migrating MSBuild tasks to multithreaded mode support, including compatibility red-team review. Use this when converting tasks to thread-safe versions, implementing IMultiThreadableTask, adding TaskEnvironment support, or auditing migrations for behavioral compatibility.
narrative-text-visualization
by antvis
Generate structured narrative text visualizations from data using T8 Syntax. Use when users want to create data interpretation reports, summaries, or structured articles with semantic entity annotations. T8 is designed for unstructured data visualization where T stands for Text and 8 represents a byte of 8 bits, symbolizing deep insights beneath the text.
bio-differential-splicing
by GPTomics
Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). Reports events with FDR-corrected significance and delta PSI effect sizes. Use when comparing splicing patterns between treatment groups, tissues, or disease states.
bio-alignment-msa-parsing
by GPTomics
Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.
bio-chipseq-peak-annotation
by GPTomics
Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. Assign peaks to promoters, exons, introns, and intergenic regions. Find nearest genes and calculate distance to TSS. Generate annotation plots and statistics. Use when annotating ChIP-seq peaks to genomic features.
bio-splicing-quantification
by GPTomics
Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. Calculates inclusion levels for skipped exons, alternative splice sites, mutually exclusive exons, and retained introns. Use when measuring splice site usage or isoform ratios from RNA-seq data.
bio-clinical-databases-myvariant-queries
by GPTomics
Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. Use when annotating variants with clinical and population data from multiple sources simultaneously.
packages-documentation
by reactive
Write, update, and format docs for public APIs - API reference, README, docstrings, usage examples, migration guides, deprecation notices
bio-sashimi-plots
by GPTomics
Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. Visualizes differential splicing events with grouped samples and junction read support. Use when visualizing specific splicing events or validating differential splicing results.
bio-splicing-qc
by GPTomics
Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. Use when evaluating data suitability for splicing analysis or troubleshooting low event detection.
bio-clinical-databases-dbsnp-queries
by GPTomics
Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.
lookup
by nweii
"Explain the meaning of selected text using surrounding context. Identifies unclear words, phrases, idioms, or colloquialisms and provides concise definitions with cultural context and usage notes."
vera-language
by aallan
Write programs in the Vera programming language. Use when asked to write, edit, debug, or review Vera code (.vera files). Vera is a statically typed, purely functional language with algebraic effects, mandatory contracts, and typed slot references (@T.n) instead of variable names.
e2e-testing
by oakoss
'E2E test architecture and patterns with Playwright. Use when designing test suites, structuring Page Object Models, planning CI sharding strategies, setting up authentication flows, or organizing tests with tags and annotations. Use for test architecture, accessibility auditing with axe-core, network mocking strategies, visual regression workflows, HAR replay, and storageState authentication patterns. For Playwright API details, browser automation, or web scraping, use the playwright skill instead.'
data-visualizer
by oakoss
'Charts, dashboards, and data visualizations using Recharts, Chart.js, and D3.js. Use when building charts, dashboards, or interactive data displays. Use for chart type selection, data storytelling, annotation patterns, responsive design, accessibility, and performance optimization.'