Comments
Code comments and annotations
extensions-api-migration
by JetBrains
Migrates IdeaVim extensions from the old VimExtensionFacade API to the new @VimPlugin annotation-based API. Use when converting existing extensions to use the new API patterns.
pr-review-ci-fix
by ComposioHQ
Automated PR review and CI auto-fix for GitHub and GitLab using the Composio CLI. Pulls diffs, fetches failing job logs, posts review comments, and loops fix commits until checks go green.
review-pr
by NeoLabHQ
Review an existing GitHub pull request and post inline review comments on its diff. Use when the changes are on an opened PR rather than your local working tree.
github-cli
by eltmon
GitHub CLI (gh) reference for issues, PRs, and API calls
pan-reopen
by eltmon
"pan reopen <id> — re-enter the pipeline for a CLOSED/COMPLETED/CANCELLED issue. NOT for issues already in progress — use pan review restart for that."
issues-deduplication
by JetBrains
Handles deduplication of YouTrack issues. Use when cleaning up duplicate issues, consolidating related bug reports, or organizing issue tracker.
caveman-review
by eltmon
Ultra-compressed code review comments. Cuts noise from PR feedback while preserving the actionable signal. Each comment is one line: location, problem, fix. Use when user says "review this PR", "code review", "review the diff", "/review", or invokes /caveman-review. Auto-triggers when reviewing pull requests.
scgpt
by BioTender-max
Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN tasks. For probabilistic single-cell models (scVI etc.), use the scvi-tools library.
Bulk RNAseq differential expression (DeSeq2)
by BioTender-max
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
Character / CHARAL Audit
by matiaszanolli
"Deep audit of CHARAL — the per-game character ruleset → canonical ActorValues/Level/Perks layer: derived-stat formulas, leveling models, skill/attribute rosters, regen + affliction + reputation systems, population boundary"
ECS Audit
by matiaszanolli
"Deep audit of the ECS — storage backends, queries, world, systems, resources"
Audio Subsystem Audit (M44)
by matiaszanolli
"Deep audit of the M44 audio subsystem — kira backend, spatial sub-tracks, listener/unit seam, reverb send, underwater filter, streaming music — plus its engine callers (footsteps, water audio, reverb zones, REGN ambient music)"
repo-source-code-document
by open-circle
Write JSDoc comments and inline documentation for Valibot library source code in /library/src/. Use when documenting schemas, actions, methods, or utilities. Covers interface documentation, function overloads, purity annotations, inline comment patterns, and terminology consistency.
build-review-persona
by doodledood
Build a personalized PR review skill by mining GitHub review history. Extracts review patterns, communication style, priorities, and blind spots — generates a calibrated review-as-me skill that posts inline comments on PRs. Use for onboarding, cloning review style, or creating a reviewer persona.
address-pr-comments
by doodledood
'Triage and fix PR review comments. Reads comments, filters false positives (outdated, misread, wrong context, style preference), validates relevance against current diff, and fixes valid ones with confirmation. Use when: "fix pr comments", "address review feedback", "handle pr feedback".'
rebase-on-main
by doodledood
Update main/master from origin, rebase current branch on it, resolve conflicts, and push.
latex-rescue
by Calix-L
Diagnose and repair LaTeX build failures in local projects or supplied logs. Make minimal source fixes, preserve scientific content and reference keys, and report actual build evidence and unresolved errors.
pdf2tex
by Calix-L
Reconstruct editable LaTeX from PDF content using page-aware extraction and visual comparison. Preserve source evidence, flag uncertain math/tables/citations, and distinguish text extraction, OCR, reconstruction, and verified compilation.
claude-code-plugins
by melodic-software
"Verify or configure the code-metrics plugin for this repository: check probes the interpreter, every configuration layer (user-global, team, local overlay, and the consumer's ecosystem files) for the YAML subset and the tracked-file guard, prints every reference with the layer that supplied it, and probes each collector adapter (a version, or missing with its install hint); apply writes the tracked .claude/code-metrics.yaml team layer per key, idempotently, never installing a tool and never editing .gitignore. Use when: 'set up code-metrics', 'configure code metrics', 'is code-metrics configured', 'which collectors are installed', 'set the cyclomatic reference', 'change the file length reference', 'code-metrics setup', or an audit skill reports a configuration layer it could not read."
claude-code-plugins
by melodic-software
"Chart a repository and the systems it references as a C4 System Landscape plus an application-portfolio table: extract typed reference edges and portfolio facts from tested scripts, commit the result as a landscape record, report drift against it, and render both artifacts into the declared architecture home. Use when: 'map our landscape', 'system landscape', 'what systems do we have', 'what does this repo depend on', 'application portfolio', 'who owns which repo', 'what runtimes are we on', 'chart our repositories', 'C4 context across repos', 'inventory our systems', 'has our landscape drifted'. Skip when: the question is module-level structure inside one codebase (shallow modules, seam placement) which is /architecture:improve, fleet cleanup (stale branches, orphaned worktrees) which is /repo-fleet-hygiene:audit, org settings which is /github:audit, or doc-versus-code drift inside one repository which is /codebase-health:audit."
claude-code-plugins
by melodic-software
"Measure lines per file for the changed files (the default), explicit paths, or the whole tree (--all), every text file in every lane, each beside a configurable reference with its provenance, longest first. Reports, never gates. Use when: 'how long are these files', 'lines per file', 'file size audit', 'which files are too big', 'LOC per file', 'is this file over 1000 lines', 'count lines in the change'. Complexity: /code-metrics:audit-complexity."
Code metrics knowledge base
by melodic-software
"Metric literacy for what this plugin reports: what each measure means, where each reference value comes from, and what none of them can tell a reader. Use when: 'what does cyclomatic complexity mean', 'is CRAP a real metric', 'why is the cyclomatic reference 20', 'what is a good coverage number', 'which metric should I look at', 'code metrics principles'. The numbers themselves: the /code-metrics:audit-* skills."
claude-code-plugins
by melodic-software
"Hunt dead code in four lanes (Knip, vulture, gopls, portable grep). Read-only. Use when: 'find dead code', 'audit dead code', 'what is unused in this repo', 'unused exports', 'unreferenced functions', 'orphaned files', 'is anything here still called', 'dead code sweep'. Orphaned files: recognized source extensions only. Not for applying the deletion (/code-tidying:tidy), diff-scoped simplification (/code-tidying:batch-simplify), or comment residue (/code-tidying:audit-comment-residue)."
review-comments
by matthiasn
Fetch PR review comments, address each one in code, and post resolution replies