CLI Tools
Command line utilities
setup
by fcakyon
This skill should be used when the user asks "how to setup GitHub CLI", "configure gh", "gh auth not working", "GitHub CLI connection failed", "gh CLI error", or needs help with GitHub authentication.
github-auto-star
by cat-xierluo
"从内容（文章、截图、文字）中自动提取 GitHub 仓库并 star。使用场景：(1) 用户要求分析内容并 star 相关 GitHub 项目，(2) 处理提到工具或库的文章/博客，(3) 分析包含技术引用的截图，(4) 设置定时任务自动发现并 star 仓库。"
recap
by Soul-Brews-Studio
Session orientation and awareness. Use when starting a session, after /jump, lost your place, switching context, or when user asks "now", "where are we", "what are we doing", "status".
bio-alignment-indexing
by GPTomics
Create and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to alignment files or fetching specific genomic regions.
bio-chipseq-qc
by GPTomics
ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irreproducibility Discovery Rate) for replicate concordance. Use to assess experiment quality before downstream analysis. Use when assessing ChIP-seq data quality metrics.
bio-atac-seq-atac-qc
by GPTomics
Quality control metrics for ATAC-seq data including fragment size distribution, TSS enrichment, FRiP, and library complexity. Use when assessing ATAC-seq library quality before or after peak calling to identify problematic samples.
bio-sam-bam-basics
by GPTomics
View, convert, and understand SAM/BAM/CRAM alignment files using samtools and pysam. Use when inspecting alignments, converting between formats, or understanding alignment file structure.
bio-differential-splicing
by GPTomics
Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). Reports events with FDR-corrected significance and delta PSI effect sizes. Use when comparing splicing patterns between treatment groups, tissues, or disease states.
openhands
by NousResearch
Delegate coding to OpenHands CLI (model-agnostic, LiteLLM).
trading-signal
by binance
Per-trade smart-money signals — each result is a discrete buy or sell event from a tracked smart-money wallet, with trigger price, current price, max gain since trigger, and exit rate. BSC and Solana only. Use for: "smart money buy signal on $X", "any whale just bought $Y", "alpha signals in the last hour", "copy-trade-worthy signals", "trigger price and max gain on these trades", "on-chain trading signals from smart money".
bio-reference-operations
by GPTomics
Generate consensus sequences and manage reference files using samtools. Use when creating consensus from alignments, indexing references, or creating sequence dictionaries.
bio-chipseq-motif-analysis
by GPTomics
De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or other genomic peak data. Use when finding enriched DNA motifs in peak sequences.
bio-duplicate-handling
by GPTomics
Mark and remove PCR/optical duplicates using samtools fixmate and markdup. Use when preparing alignments for variant calling or when duplicate reads would bias analysis.
bio-alignment-sorting
by GPTomics
Sort alignment files by coordinate or read name using samtools and pysam. Use when preparing BAM files for indexing, variant calling, or paired-end analysis.
bio-alignment-filtering
by GPTomics
Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions.
github-projects
by existential-birds
GitHub Projects management via gh CLI for creating projects, managing items, fields, and workflows. Use when working with GitHub Projects (v2), adding issues/PRs to projects, creating custom fields, tracking project items, or automating project workflows. Triggers on gh project, project board, kanban, GitHub project, project items.
langgraph-implementation
by existential-birds
Implements stateful agent graphs using LangGraph. Use when building graphs, adding nodes/edges, defining state schemas, implementing checkpointing, handling interrupts, or creating multi-agent systems with LangGraph.
marp-export
by brycewang-stanford
Export Marp slide markdown files to PDF (default), HTML, PPTX, or PNG. Handles theme loading, Chrome/Chromium detection for PDF export, and batch conversion. Trigger when user says "export slides", "convert marp to pdf", "marp export", "slides to pdf", "slides to html", "导出slides", "slides转pdf", "导出演示文稿".
building-github-index
by oaustegard
Generate progressive disclosure indexes for GitHub repositories to use as Claude project knowledge. Use when setting up projects referencing external documentation, creating searchable indexes of technical blogs or knowledge bases, combining multiple repos into one index, or when user mentions "index", "github repo", "project knowledge", or "documentation reference".
context7
by pedronauck
Retrieves authoritative, up-to-date technical documentation, API references, configuration details, and code examples for any developer technology. Use this skill whenever answering technical questions or writing code that interacts with external technologies. This includes libraries, frameworks, programming languages, SDKs, APIs, CLI tools, cloud services, infrastructure tools, and developer platforms. Common scenarios: - looking up API endpoints, classes, functions, or method parameters - checking configuration options or CLI commands - answering "how do I" technical questions - generating code that uses a specific library or service - debugging issues related to frameworks, SDKs, or APIs - retrieving setup instructions, examples, or migration guides - verifying version-specific behavior or breaking changes Prefer this skill whenever documentation accuracy matters or when model knowledge may be outdated.
extreme-software-optimization
by pedronauck
Profile-driven performance optimization with behavior proofs. Use when: optimize, slow, bottleneck, hotspot, profile, p95, latency, throughput, or algorithmic improvements.
podchaser
by vm0-ai
Podchaser GraphQL API for podcast data, discovery, episodes, creators, and sponsorship information.
htmlcsstoimage
by vm0-ai
HTMLCSStoImage API via curl. Use this skill to generate images from HTML/CSS or capture screenshots of web pages.
postdoc-fellowship-matcher
by aipoch
Match postdoc applicants to eligible fellowships based on nationality