CLI Tools
Command line utilities
fix-bug
by tddworks
Guide for fixing bugs in ClaudeBar following Chicago School TDD and rich domain design. Use this skill when: (1) User reports a bug or unexpected behavior (2) Fixing a defect in existing functionality (3) User asks "fix this bug" or "this doesn't work correctly" (4) Correcting behavior that violates the user's mental model
autonew
by bfly123
Send /new to a provider's pane to start a new session without context injection.
sred-work-summary
by getsentry
Go back through the previous year of work and create a Notion doc that groups relevant links into projects that can then be documented as SRED projects.
package-management
by Aaronontheweb
Manage NuGet packages using Central Package Management (CPM) and dotnet CLI commands. Never edit XML directly - use dotnet add/remove/list commands. Use shared version variables for related packages.
dotnet-local-tools
by Aaronontheweb
Managing local .NET tools with dotnet-tools.json for consistent tooling across development environments and CI/CD pipelines.
build-fix
by Yeachan-Heo
Fix build and TypeScript errors with minimal changes
flow-develop
by nyldn
Multi-AI implementation using Codex and Gemini CLIs (Double Diamond Develop phase). Use when: AUTOMATICALLY ACTIVATE when user requests building or implementation:. "build X" or "implement Y" or "create Z". "develop a feature for X"
state-directory-manager
by majiayu000
Manage persistent state directories for bash scripts
codex-delegator
by majiayu000
Automatically delegate complex, logic-intensive tasks to OpenAI Codex CLI via codex exec --full-auto. Claude Code uses this skill to invoke Codex for complex backend logic, intricate algorithms, or persistent bugs. Enables seamless AI-to-AI collaboration where Claude Code analyzes and Codex executes.
linear-cli
by schpet
Manage Linear issues from the command line using the linear cli. This skill allows automating linear management.
session-state
by Chachamaru127
"SESSION_ORCHESTRATION.mdに基づくセッション状態遷移管理。内部用。Do NOT load for: user session management, login state, app state handling."
ghidra
by mitsuhiko
"Reverse engineer binaries using Ghidra's headless analyzer. Decompile executables, extract functions, strings, symbols, and analyze call graphs without GUI."
ralph-plan
by mastra-ai
Interactive planning assistant that helps create focused, well-structured ralph-loop commands through collaborative conversation
configure-discord
by Yeachan-Heo
Configure Discord webhook/bot notifications via natural language
beads
by steveyegge
Git-backed issue tracker for multi-session work with dependencies and persistent memory across conversation compaction. Use when work spans sessions, has blockers, or needs context recovery after compaction.
setup
by bitwize-music-studio
Detects your Python environment and guides you through installing plugin dependencies. Use on first-time setup or when MCP server fails to start.
omx-setup
by Yeachan-Heo
Setup and configure oh-my-codex using current CLI behavior
hugging-face-jobs
by huggingface
This skill should be used when users want to run any workload on Hugging Face Jobs infrastructure. Covers UV scripts, Docker-based jobs, hardware selection, cost estimation, authentication with tokens, secrets management, timeout configuration, and result persistence. Designed for general-purpose compute workloads including data processing, inference, experiments, batch jobs, and any Python-based tasks. Should be invoked for tasks involving cloud compute, GPU workloads, or when users mention running jobs on Hugging Face infrastructure without local setup.
local-dev
by comet-ml
Local development environment setup and commands. Use when helping with dev server, Docker, or local testing.
bio-atac-seq-nucleosome-positioning
by GPTomics
Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. Use when analyzing chromatin organization, identifying nucleosome-free regions at promoters, or characterizing nucleosome occupancy patterns from ATAC-seq fragment size distributions.
bio-atac-seq-footprinting
by GPTomics
Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. Use when identifying TF occupancy patterns within accessible regions, as TF binding protects DNA from Tn5 cutting.
bio-splicing-quantification
by GPTomics
Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. Calculates inclusion levels for skipped exons, alternative splice sites, mutually exclusive exons, and retained introns. Use when measuring splice site usage or isoform ratios from RNA-seq data.
bio-alignment-validation
by GPTomics
Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other post-alignment metrics. Use when verifying alignment data quality before variant calling or quantification.
bio-alignment-files-bam-statistics
by GPTomics
Generate alignment statistics using samtools flagstat, stats, depth, and coverage. Use when assessing alignment quality, calculating coverage, or generating QC reports.