SergeiNikolenko

molecule-collection

"Use when reviewing SDF or molecule-property collections with bounded tables, filters, selected-molecule handoff, and Burette panels."

SergeiNikolenko 69 5 Actualitzat fa 3 mesos

Recursos

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GitHub

Instal·la

npx skillscat add sergeinikolenko/burette/molecule-collection

Instal·la des del registre de SkillsCat.

SKILL.md

Molecule Collection

Use this workflow for SDF sets, property tables, score tables, filtered
collections, and selected molecule review.

Workflow

  1. Prepare or receive a local SDF/CSV/JSON artifact outside Burette when
    computation is required.
  2. Validate the collection as a bounded molecular artifact before rendering.
  3. Render reviewed rows in a Burette side panel or open the collection as a
    normal workspace document.
  4. If the user selects a row, hand the selected molecule or derived structure
    back to open-workspace or molstar-scene.

Data Contract

Rows should stay compact and reviewable. Keep useful fields for exploration:

  • molecule id or title;
  • SMILES or source record id when safe;
  • score or property columns;
  • filter flags;
  • source path or run id.

Do not claim filtering or property calculation happened inside Burette unless a
Burette runtime actually performed it. Prefer external RDKit or workflow tools
for chemistry computation, then display the reviewed results in Burette.