Eines de línia d’ordres
Eines de línia d’ordres
arboreto
K-Dense-AI
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
gtars
K-Dense-AI
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
gget
K-Dense-AI
"Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices."
diffdock
K-Dense-AI
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
surf
nicobailon
Control Chrome browser via CLI for testing, automation, and debugging. Use when the user needs browser automation, screenshots, form filling, page inspection, network/CPU emulation, DevTools streaming, or AI queries via ChatGPT/Gemini/Perplexity/Grok/AI Studio.
wiki-cli
AgriciDaniel
"Detect and use the official Obsidian command-line interface for read-only vault access; use for wiki-cli, Obsidian CLI, Obsidian read, Obsidian search, vault transport, which transport, transport detection, backlinks, tags, or Obsidian command line. Mutations always go through the claude-obsidian transaction core."
claude-code-plugins
melodic-software
"Multi-source external research in chained phases — corpus enumeration, broad, targeted + falsification, preferred sources — with per-claim source tiers, recency checks, a coverage ledger, and a binary outcome gate before presenting. Dispatches a fresh-context subagent by default so the research transcript stays out of the main conversation, with a documented inline escape hatch. Use when: 'research this', 'verify a technical claim', 'evaluate libraries or approaches', 'compare X vs Y', 'is this still current', 'find the authoritative source', 'what do the official docs say', or grounding any decision in current authoritative sources instead of training data. This is the right skill for a single topic, including a small one — for a multi-topic or workflow-driven pass that fans one question across several dispatches, use research-deep, which layers tiered execution on this same discipline."
claude-code-plugins
melodic-software
"Verify the Dometrain plugin without reading or exposing its API key. Use when: 'set up Dometrain', 'configure Dometrain', 'Dometrain setup', the Dometrain MCP server is unavailable, or a Dometrain tool reports an authentication error. Actions: check (read-only verification, default and only action — this plugin's entire configuration is native userConfig, so there is nothing an apply could write)."
claude-code-plugins
melodic-software
"Verify the biome-format hook's runtime prerequisites and configuration for this repository. Use when: 'set up biome-format', 'configure biome-format', 'is biome-format working', formatting silently isn't happening, or the hook reported a missing prerequisite. Actions: check (read-only verification, default) apply (resolve what check found). Re-runnable and safe."
claude-code-plugins
melodic-software
"Explore the local codebase before making changes — read code, trace dependencies, scan git history, discover tests, and audit build and tool configuration, persisting an EXPLORE.md index plus sidecars. Dispatches a fresh-context subagent by default so the file reads stay out of the main conversation, with a documented inline escape hatch. Use when: 'explore the codebase', 'what exists for X' investigation, 'how does this work', 'where is X implemented', 'trace the dependencies', 'what tests cover this', or as step 1 before any code change."
claude-code-plugins
melodic-software
"Verify the eol-normalizer hook's runtime prerequisites and configuration for this repository. Use when: 'set up eol-normalizer', 'configure eol-normalizer', 'is eol-normalizer working', line endings silently aren't normalizing, or the hook reported a missing prerequisite. Actions: check (read-only verification, default) apply (resolve what check found). Re-runnable and safe."
claude-code-plugins
melodic-software
"Scan a codebase for module-level friction (shallow modules, seam leaks, locality gaps), report candidates as HTML, interview the selected candidate with a Design-It-Twice branch, and hand off the agreed shape. Use when: 'improve architecture', 'find deepening opportunities', 'shallow modules', 'Ousterhout deepening', 'design it twice', 'compare alternative interfaces', 'make code more testable', 'make code more AI-navigable', 'find refactoring opportunities', 'codebase friction', 'module seams', 'locality'. Skip when: a cross-dimension ask ('what should we improve', 'highest-impact improvement', or 'find improvements') routes to /improvement:find; also skip mechanical tidying, diff review, architecture-rule enforcement, or root-cause debugging."
audit-statuslines
melodic-software
Audit Claude Code status lines for quality and cross-platform compatibility. Use when creating or validating custom status line scripts, or troubleshooting terminal output issues.
context7-cli
melodic-software
Use the ctx7 CLI to fetch library documentation, manage AI coding skills, and configure Context7 MCP. Activate when the user mentions "ctx7" or "context7", needs current docs for any library, wants to install/search/generate skills, or needs to set up Context7 for their AI coding agent.
mobile-pentest
Sekolah76
'Mobile app pentest for bug bounty (Android APK + iOS IPA) — runtime-first workflow: install app, proxy through Burp/mitmproxy, drive the UI, capture packets, then test the API exactly like a web target; escalate to decompile (apktool/jadx) and Frida/objection only when traffic is SSL-pinned, encrypted, or absent. Covers APK/IPA decompile for hardcoded secrets + hidden API endpoints + base URLs the web app never exposes, exported-activity and deeplink intent injection, WebView addJavascriptInterface bridge abuse, SSL pinning bypass (objection patchapk / Frida CertificatePinner + checkServerTrusted hooks), OkHttp interceptor chain to recover request signing, JNI native-lib triage, and the quick apktool/grep secret + endpoint sweep. Use when the program scope includes a mobile app, when web recon dries up and you need a fresh attack surface, or when traffic is pinned and you must MitM it.'
windows-privilege-escalation
Sekolah76
"Provide systematic methodologies for discovering and exploiting privilege escalation vulnerabilities on Windows systems during penetration testing engagements."
pentest-commands
Sekolah76
"Provide a comprehensive command reference for penetration testing tools including network scanning, exploitation, password cracking, and web application testing. Enable quick command lookup during security assessments."
privilege-escalation-methods
Sekolah76
"Provide comprehensive techniques for escalating privileges from a low-privileged user to root/administrator access on compromised Linux and Windows systems. Essential for penetration testing post-exploitation phase and red team operations."
linux-privilege-escalation
Sekolah76
"Execute systematic privilege escalation assessments on Linux systems to identify and exploit misconfigurations, vulnerable services, and security weaknesses that allow elevation from low-privilege user access to root-level control."
shodan-reconnaissance
Sekolah76
"Provide systematic methodologies for leveraging Shodan as a reconnaissance tool during penetration testing engagements."
ghost-scan-code
Sekolah76
"Ghost Security - SAST code scanner. Finds security vulnerabilities in source code by planning and executing targeted scans for issues like SQL injection, XSS, BOLA, BFLA, SSRF, and other OWASP categories. Supports applications (backend, frontend, mobile) and libraries (prototype pollution, unsafe deserialization, ReDoS, path traversal, zip slip). Use when the user asks for a code security audit, SAST scan, vulnerability scan of source code, or wants to find security flaws in a codebase or library."
ethical-hacking-methodology
Sekolah76
"Master the complete penetration testing lifecycle from reconnaissance through reporting. This skill covers the five stages of ethical hacking methodology, essential tools, attack techniques, and professional reporting for authorized security assessments."
agent-memory-mcp
benjaminasterA
"A hybrid memory system that provides persistent, searchable knowledge management for AI agents (Architecture, Patterns, Decisions)."
active-directory-attacks
benjaminasterA
"This skill should be used when the user asks to \"attack Active Directory\", \"exploit AD\", \"Kerberoasting\", \"DCSync\", \"pass-the-hash\", \"BloodHound enumeration\", \"Golden Ticket\", ..."