igv-screenshots

Security scan

AI scan Low

VirusTotal scan Unknown

This skill generates IGV screenshots using igver for genomic visualization. Use when user asks to "take IGV screenshot", "IGV snapshot", "visualize BAM in IGV", "igver screenshot", "show me the reads at", "screenshot genomic region", "visualize methylation in IGV", "IGV plot of BAM", "generate IGV images", "look at this region in IGV", "screenshot structural variant", "haplotype visualization in IGV", or any mention of IGV/igver with BAM files. Handles Singularity/Docker execution, chromosome naming mismatches, methylation coloring (ONT/PacBio), and batch generation for large region sets.