Recently Added
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vastai-api
by rawveg
Vast.ai API Documentation - Affordable GPU Cloud Marketplace
linode-api
by rawveg
Linode API Documentation
linode-cli
by rawveg
Linode CLI Documentation
notion-knowledge-capture
by Prat011
Transforms conversations and discussions into structured documentation pages in Notion. Captures insights, decisions, and knowledge from chat context, formats appropriately, and saves to wikis or databases with proper organization and linking for easy discovery.
notion-spec-to-implementation
by Prat011
Turns product or tech specs into concrete Notion tasks that Claude code can implement. Breaks down spec pages into detailed implementation plans with clear tasks, acceptance criteria, and progress tracking to guide development from requirements to completion.
notion-meeting-intelligence
by Prat011
Prepares meeting materials by gathering context from Notion, enriching with Claude research, and creating both an internal pre-read and external agenda saved to Notion. Helps you arrive prepared with comprehensive background and structured meeting docs.
notion-research-documentation
by Prat011
Searches across your Notion workspace, synthesizes findings from multiple pages, and creates comprehensive research documentation saved as new Notion pages. Turns scattered information into structured reports with proper citations and actionable insights.
bulktrajblend-trajectory-interpolation
by Starlitnightly
Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states.
bulk-rna-seq-deseq2-analysis-with-omicverse
by Starlitnightly
Walk Claude through PyDESeq2-based differential expression, including ID mapping, DE testing, fold-change thresholding, and enrichment visualisation.
single-cell-multi-omics-integration
by Starlitnightly
Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography.
single-trajectory-analysis
by Starlitnightly
Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.
single-cell-downstream-analysis
by Starlitnightly
Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports.
spatial-transcriptomics-tutorials-with-omicverse
by Starlitnightly
Guide users through omicverse's spatial transcriptomics tutorials covering preprocessing, deconvolution, and downstream modelling workflows across Visium, Visium HD, Stereo-seq, and Slide-seq datasets.
tcga-bulk-data-preprocessing-with-omicverse
by Starlitnightly
Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.
single2spatial-spatial-mapping
by Starlitnightly
Map scRNA-seq atlases onto spatial transcriptomics slides using omicverse's Single2Spatial workflow for deep-forest training, spot-level assessment, and marker visualisation.
bulk-rna-seq-differential-expression-with-omicverse
by Starlitnightly
Guide Claude through omicverse's bulk RNA-seq DEG pipeline, from gene ID mapping and DESeq2 normalization to statistical testing, visualization, and pathway enrichment. Use when a user has bulk count matrices and needs differential expression analysis in omicverse.
bulk-wgcna-analysis-with-omicverse
by Starlitnightly
Assist Claude in running PyWGCNA through omicverse—preprocessing expression matrices, constructing co-expression modules, visualising eigengenes, and extracting hub genes.
string-protein-interaction-analysis-with-omicverse
by Starlitnightly
Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
bulk-rna-seq-deconvolution-with-bulk2single
by Starlitnightly
Turn bulk RNA-seq cohorts into synthetic single-cell datasets using omicverse's Bulk2Single workflow for cell fraction estimation, beta-VAE generation, and quality control comparisons against reference scRNA-seq.
single-cell-cellphonedb-communication-mapping
by Starlitnightly
Run omicverse's CellPhoneDB v5 wrapper on annotated single-cell data to infer ligand-receptor networks and produce CellChat-style visualisations.
bulk-rna-seq-batch-correction-with-combat
by Starlitnightly
Use omicverse's pyComBat wrapper to remove batch effects from merged bulk RNA-seq or microarray cohorts, export corrected matrices, and benchmark pre/post correction visualisations.
writeas
by rawveg
Write.as API Documentation
rip-video
by mojito-llm
根据 todolist.md 使用 MCP 从 MP4 视频提取音频和字幕。读取任务清单，调用 MCP 服务提取封面、音频(mp3)和字幕(srt)，更新任务完成状态。
parse-video
by mojito-llm
根据 todolist.md 使用 MCP 解析视频元数据并下载。读取任务清单，调用 MCP 服务下载视频和封面，保存元数据 JSON，更新任务完成状态。