Comments

encode-database

by jaechang-hits

"Query the ENCODE Portal REST API for regulatory genomics data: TF ChIP-seq experiments, ATAC-seq/DNase-seq accessibility peaks, histone mark tracks, and RNA-seq datasets across 1000+ cell types and tissues. Search experiments by assay, biosample, or target protein; download BED/bigWig files; retrieve candidate cis-regulatory elements (cCREs) from ENCODE SCREEN by genomic region or gene. Use for finding regulatory tracks to annotate variants, identifying open chromatin in a cell type of interest, and downloading peak files for ChIP-seq or ATAC-seq analysis. For regulatory variant scoring use regulomedb-database; for GWAS associations use gwas-database."

x-ray

by pashov

"Generates an x-ray.md pre-audit report covering overview, enhanced threat model (protocol-type profiling, git-weighted attack surfaces, temporal risk analysis, composability dependency mapping), invariants, integrations, docs quality, test analysis, and developer/git history. Triggers on 'x-ray', 'audit readiness', 'readiness report', 'pre-audit report', 'prep this protocol', 'protocol prep', 'summarize this protocol'."

0xwork

by BankrBot

"Find and complete paid tasks on the 0xWork decentralized marketplace (Base chain, USDC escrow). Use when: the agent wants to earn money/USDC by doing work, discover available tasks, claim a bounty, submit deliverables, post tasks with bounties, check earnings or wallet balance, sell digital products, list services, or set up as a 0xWork worker/poster. Task categories: Writing, Research, Social, Creative, Code, Data. NOT for: managing the 0xWork platform or frontend development."

gitlawb

by BankrBot

Decentralized git for AI agents and humans. Use when the user wants to create repositories, push code, open pull requests, review and merge PRs, manage issues, create or claim bounties, delegate tasks to other agents, register human-readable names on Base L2, or interact with the gitlawb decentralized git network. Supports cryptographic DID identities, Ed25519-signed pushes, UCAN capability delegation, libp2p networking, and 31+ MCP tools for AI agent integration. Do NOT use for GitHub, GitLab, or other centralized git hosts.

process-reviews

by flonat

"Process referee comments from a reviews PDF into standardised tracking files: comment tracker, review analysis, and LaTeX verbatim transcription. Triggers: 'got referee comments', 'process reviewer feedback', 'R&R response'. Not for writing the response — this extracts and organises the comments."

pr-review

by Gentleman-Programming

Reviews GitHub PRs and leaves human, direct comments. Trigger: When user asks to review a PR, check a PR, or gives a PR URL.

vera-language

by aallan

Write programs in the Vera programming language. Use when asked to write, edit, debug, or review Vera code (.vera files). Vera is a statically typed, purely functional language with algebraic effects, mandatory contracts, and typed slot references (@T.n) instead of variable names.

Testing Patterns

by Dicklesworthstone

Common testing patterns and practices. This skill is designed to be included in composite skills via the 'includes' feature.

signal-over-noise

by JamieMason

Maximize useful information per word by removing filler, obvious explanations, and hedging language. Use when writing documentation, error messages, code comments, or any communication where clarity and conciseness matter.

error-message-explainer

by proflead

Explain compiler/runtime errors in plain language. Use when a junior developer needs help understanding an error message.

Documentation Standards

by HoangNguyen0403

Essential rules for code comments, READMEs, and technical documentation.

my-skill-name

by dadbodgeoff

Brief description of what this skill does and when to use it. Be specific about capabilities and use cases to help agents decide when to load this skill.

ln-610-code-comments-auditor

by levnikolaevich

Audit code comments and docstrings quality across 6 categories (WHY-not-WHAT, Density, Forbidden Content, Docstrings, Actuality, Legacy). Use when code needs comment review, after major refactoring, or as part of ln-100-documents-pipeline. Outputs Compliance Score X/10 per category + Findings + Recommended Actions.

ln-514-regression-checker

by levnikolaevich

Worker that runs existing tests to catch regressions. Auto-detects framework, reports pass/fail. No status changes or task creation.

clinvar-database

by jimmc414

"Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine."

lint

by kurtosis-tech

Lint and format Kurtosis Starlark files. Check syntax, validate docstrings, and auto-format .star files. Use when writing or reviewing Starlark packages to ensure code quality.

clinpgx-database

by jaechang-hits

"Query PharmGKB (Clinical Pharmacogenomics) database via REST API for drug-gene interactions, clinical annotations, dosing guidelines (CPIC, DPWG), variant-drug associations, and pharmacogenomic pathways. Search by gene, drug, rsID, or pathway. No authentication required. For somatic cancer pharmacogenomics use cosmic-database or opentargets-database; for drug structures use chembl-database-bioactivity."

bioservices-multi-database

by jaechang-hits

Unified Python interface to 40+ bioinformatics web services via bioservices library. Query UniProt proteins, KEGG pathways, ChEMBL/ChEBI/PubChem compounds, run BLAST searches, map identifiers across databases, retrieve GO annotations, and find protein-protein interactions. For single-database deep queries use dedicated tools (gget for Ensembl, pubchempy for PubChem); bioservices excels at cross-database integration workflows.

cellxgene-census

by jaechang-hits

"Query CELLxGENE Census (61M+ cells) programmatically. Search by cell type, tissue, disease, organism. Get expression matrices as AnnData, stream large queries out-of-core, train PyTorch models on single-cell data. For analyzing your own data use scanpy; for annotated data manipulation use anndata."

Absurdist Voice

by omer-metin

docx

by Memento-Teams

"Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of \"Word doc\", \"word document\", \".docx\", or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a \"report\", \"memo\", \"letter\", \"template\", or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation."

jspecify-nullness

by alexandru

JSpecify nullness annotations for Java APIs and tooling. Use when adopting or migrating JSpecify annotations, designing null-safe Java signatures and generics, or interpreting tool conformance and Kotlin interop.

kotlin-java-library

by alexandru

Kotlin design for Java libraries and Java consumers. Use when building Kotlin code intended for Java callers, aligning with Java interop, JVM annotations, records, and backward/binary compatibility rules.

gene-database

by jaechang-hits

"Query NCBI Gene via E-utilities for curated gene records across 1M+ taxa. Retrieve official gene symbols, aliases, RefSeq accessions, summary descriptions, genomic coordinates, GO annotations, and interaction data. Use for gene ID resolution, cross-species queries, and gene function summaries. For sequence retrieval use Ensembl; for expression data use geo-database."